Active learning for anaphora resolution
HLT '09 Proceedings of the NAACL HLT 2009 Workshop on Active Learning for Natural Language Processing
Semi-supervised anaphora resolution in biomedical texts
BioNLP '06 Proceedings of the Workshop on Linking Natural Language Processing and Biology: Towards Deeper Biological Literature Analysis
Statistical anaphora resolution in biomedical texts
COLING '08 Proceedings of the 22nd International Conference on Computational Linguistics - Volume 1
Semi-supervised anaphora resolution in biomedical texts
LNLBioNLP '06 Proceedings of the HLT-NAACL BioNLP Workshop on Linking Natural Language and Biology
A modular database architecture enabled to comparative sequence analysis
Transactions on large-scale data- and knowledge-centered systems IV
Genome design with the semantic web
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences
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This Sequence Ontology (SO)[13] aims to unify the way in which we describe sequence annotations, by providing a controlled vocabulary of terms and the relationships between them. Using SO terms to label the parts of sequence annotations greatly facilitates downstream analyses of their contents, as it ensures that annotations produced by different groups conform to a single standard. This greatly facilitates analyses of annotation contents and characteristics, e.g. comparisons of UTRs, alternative splicing, etc. Because SO also specifies the relationships between features, e.g. part_of, kind_of, annotations described with SO terms are also better substrates for validation and visualization software.This document provides a step-by-step guide to producing a SO compliant file describing a sequence annotation. We illustrate this by using an annotated gene as an example. First we show where the terms needed to describe the gene's features are located in SO and their relationships to one another. We then show line by line how to format the file to construct a SO compliant annotation of this gene. Copyright © 2005 John Wiley & Sons, Ltd.