A framework for knowledge-based temporal abstraction
Artificial Intelligence
Applying case-based reasoning: techniques for enterprise systems
Applying case-based reasoning: techniques for enterprise systems
Data mining: concepts and techniques
Data mining: concepts and techniques
Information-theoretic co-clustering
Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining
Sequence Ontology annotation guide: Conference Papers
Comparative and Functional Genomics
A new protein motif extraction framework based on constrained co-clustering
Proceedings of the 2009 ACM symposium on Applied Computing
Multi-level Abstractions and Multi-dimensional Retrieval of Cases with Time Series Features
ICCBR '09 Proceedings of the 8th International Conference on Case-Based Reasoning: Case-Based Reasoning Research and Development
Co-clustering numerical data under user-defined constraints
Statistical Analysis and Data Mining
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The beginning of post-genomic era is characterized by a rising numbers of public collected genomes. The evolutionary relationship among these genomes may be caught by means of the comparative analysis of sequences, in order to identify both homologous and noncoding functional elements. In this paper we report on the on-going BIOBITS project. It is focused on studies concerning the bacterial endosymbionts, since they offer an excellent model to investigate important biological events, such as organelle evolution, genome reduction, and transfer of genetic information among host lineages. The BIOBITS goal is two-side: on the one hand, it pursues a logical data representation of genomic and proteomic components. On the other hand, it aims at the development of software modules allowing the user to retrieve and analyze data in a flexible way.