RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets

  • Authors:

  • F. Lazzarato;G. Franceschinis;M. Botta;F. Cordero;R. A. Calogero

  • Affiliations:

  • Department of Informatics, University of Piemonte Orientale 'Amedeo Avogadro', Spalto Marengo 33, Alessandria, Italy,;Department of Informatics, University of Piemonte Orientale 'Amedeo Avogadro', Spalto Marengo 33, Alessandria, Italy,;Department of Informatics University of Torino, Corso Svizzera 185-10149, Torino, Italy;Department of Clinical and Biological Sciences University of Torino, Regione Gonzole 10, 10043 Orbassano (TO), Italy;Department of Clinical and Biological Sciences University of Torino, Regione Gonzole 10, 10043 Orbassano (TO), Italy

  • Venue:
  • Bioinformatics
  • Year:
  • 2004

Quantified Score

Hi-index 3.84

Visualization

Abstract

Summary: RRE allows the extraction of non-coding regions surrounding a coding sequence [i.e. gene upstream region, 5'-untranslated region (5'-UTR), introns, 3'-UTR, downstream region] from annotated genomic datasets available at NCBI. Availability: RRE parser and web-based interface are accessible at http://www.bioinformatica.unito.it/bioinformatics/rre/rre.html