The integrated microbial genomes (IMG) system: a case study in biological data management

Authors:
Victor M. Markowitz;Frank Korzeniewski;Krishna Palaniappan;Ernest Szeto;Natalia Ivanova;Nikos C. Kyrpides
Affiliations:
Biological Data Management and Technology Center, Berkeley, CA;Biological Data Management and Technology Center, Berkeley, CA;Biological Data Management and Technology Center, Berkeley, CA;Biological Data Management and Technology Center, Berkeley, CA;Joint Genome Institute, Walnut Creek, CA;Joint Genome Institute, Walnut Creek, CA
Venue:
VLDB '05 Proceedings of the 31st international conference on Very large data bases
Year:
2005

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Abstract

Biological data management includes the traditional areas of data generation, acquisition, modelling, integration, and analysis. Although numerous academic biological data management systems are currently available, employing them effectively remains a significant challenge. We discuss how this challenge was addressed in the course of developing the Integrated Microbial Genomes (IMG) system for comparative analysis of microbial genome data.