CSB '04 Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference
Correlation between Gene Expression and GO Semantic Similarity
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Future Generation Computer Systems
Measuring semantic similarity between Gene Ontology terms
Data & Knowledge Engineering
Gene Ontology analysis in multiple gene clusters under multiple hypothesis testing framework
Artificial Intelligence in Medicine
High parallelism, portability, and broad accessibility: Technologies for genomics
ACM Journal on Emerging Technologies in Computing Systems (JETC)
Journal of Biomedical Informatics
Journal of Biomedical Informatics
Modelling gene functional linkages using yeast microarray data
International Journal of Bioinformatics Research and Applications
Expert Systems with Applications: An International Journal
SEGS: Search for enriched gene sets in microarray data
Journal of Biomedical Informatics
Gene Ontology Assisted Exploratory Microarray Clustering and Its Application to Cancer
PRIB '08 Proceedings of the Third IAPR International Conference on Pattern Recognition in Bioinformatics
Formulating and testing hypotheses in functional genomics
Artificial Intelligence in Medicine
Detection of Locally Over-Represented GO Terms in Protein-Protein Interaction Networks
RECOMB 2'09 Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology
Text-mining approach to evaluate terms for ontology development
Journal of Biomedical Informatics
Identification of critical genes in microarray experiments by a Neuro-Fuzzy approach
Computational Biology and Chemistry
Mining the Largest Dense Vertexlet in a Weighted Scale-free Graph
Fundamenta Informaticae
Data-Fusion in Clustering Microarray Data: Balancing Discovery and Interpretability
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Data Clustering Using Multi-objective Differential Evolution Algorithms
Fundamenta Informaticae
Statistical absolute evaluation of gene ontology terms with gene expression data
ISBRA'07 Proceedings of the 3rd international conference on Bioinformatics research and applications
Discovering relations among GO-annotated clusters by Graph Kernel methods
ISBRA'07 Proceedings of the 3rd international conference on Bioinformatics research and applications
Efficient generation of biologically relevant enriched gene sets
ISBRA'07 Proceedings of the 3rd international conference on Bioinformatics research and applications
TreeHugger: A New Test for Enrichment of Gene Ontology Terms
INFORMS Journal on Computing
Gene set analysis using principal components
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology
Using Gene Ontology annotations in exploratory microarray clustering to understand cancer etiology
Pattern Recognition Letters
The multi-reference contrast method: Facilitating set enrichment analysis
Computers in Biology and Medicine
Microarray data analysis and management in colorectal cancer
ISBMDA'05 Proceedings of the 6th International conference on Biological and Medical Data Analysis
Generating contexts for expression data using pathway queries
PPSWR'05 Proceedings of the Third international conference on Principles and Practice of Semantic Web Reasoning
A Top-r Feature Selection Algorithm for Microarray Gene Expression Data
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Analyzing genomic data: understanding the genome
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery
Data Clustering Using Multi-objective Differential Evolution Algorithms
Fundamenta Informaticae
CoBi: Pattern Based Co-Regulated Biclustering of Gene Expression Data
Pattern Recognition Letters
Identifying significant associations of orthologous simple sequence repeats with gene ontologies
International Journal of Data Mining and Bioinformatics
Protein Interactions for Functional Genomics
International Journal of Knowledge Discovery in Bioinformatics
| Hi-index | 3.84 |
Summary: We present a simple but powerful procedure to extract Gene Ontology (GO) terms that are significantly over- or under-represented in sets of genes within the context of a genome-scale experiment (DNA microarray, proteomics, etc.). Said procedure has been implemented as a web application, FatiGO, allowing for easy and interactive querying. FatiGO, which takes the multiple-testing nature of statistical contrast into account, currently includes GO associations for diverse organisms (human, mouse, fly, worm and yeast) and the TrEMBL/Swissprot GOAnnotations@EBI correspondences from the European Bioinformatics Institute. Availability: http://fatigo.bioinfo.cnio.es