Extracting contrastive information from negation patterns in biomedical literature
ACM Transactions on Asian Language Information Processing (TALIP)
Domain-specific language models and lexicons for tagging
Journal of Biomedical Informatics
The importance of the lexicon in tagging biological text
Natural Language Engineering
Identifying important concepts from medical documents
Journal of Biomedical Informatics
Negation recognition in medical narrative reports
Information Retrieval
@Note: A workbench for Biomedical Text Mining
Journal of Biomedical Informatics
Rapid adaptation of POS tagging for domain specific uses
BioNLP '06 Proceedings of the Workshop on Linking Natural Language Processing and Biology: Towards Deeper Biological Literature Analysis
Using automated feature optimisation to create an adaptable relation extraction system
BioNLP '08 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing
Recognising nested named entities in biomedical text
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
Interpreting comparative constructions in biomedical text
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
The extraction of enriched protein-protein interactions from biomedical text
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
Adaptation of POS tagging for multiple BioMedical domains
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
Tools to address the interdependence between tokenisation and standoff annotation
NLPXML '06 Proceedings of the 5th Workshop on NLP and XML: Multi-Dimensional Markup in Natural Language Processing
Evaluating and integrating treebank parsers on a biomedical corpus
Software '05 Proceedings of the Workshop on Software
The value of parsing as feature generation for gene mention recognition
Journal of Biomedical Informatics
Methodological Review: What can natural language processing do for clinical decision support?
Journal of Biomedical Informatics
MedTag: a collection of biomedical annotations
ISMB '05 Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics
Brief communication: Retrieving definitional content for ontology development
Computational Biology and Chemistry
Rapid adaptation of POS tagging for domain specific uses
LNLBioNLP '06 Proceedings of the HLT-NAACL BioNLP Workshop on Linking Natural Language and Biology
Reconstruction of protein-protein interaction pathways by mining subject-verb-objects intermediates
PRIB'07 Proceedings of the 2nd IAPR international conference on Pattern recognition in bioinformatics
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Arguments of nominals in semantic interpretation of biomedical text
BioNLP '10 Proceedings of the 2010 Workshop on Biomedical Natural Language Processing
Finding related sentence pairs in MEDLINE
Information Retrieval
BioNLP '11 Proceedings of BioNLP 2011 Workshop
Text mining techniques for leveraging positively labeled data
BioNLP '11 Proceedings of BioNLP 2011 Workshop
A token centric part-of-speech tagger for biomedical text
AIME'11 Proceedings of the 13th conference on Artificial intelligence in medicine
A machine learning-based system to normalise gene mentions to unique database identifiers
International Journal of Data Mining and Bioinformatics
Journal of Biomedical Informatics
Identifying well-formed biomedical phrases in MEDLINE® text
Journal of Biomedical Informatics
International Journal of Organizational and Collective Intelligence
A methodology for extending domain coverage in SemRep
Journal of Biomedical Informatics
Hi-index | 3.84 |
Summary: We present a part-of-speech tagger that achieves over 97% accuracy on MEDLINE citations. Availability: Software, documentation and a corpus of 5700 manually tagged sentences are available at ftp://ftp.ncbi.nlm.nih.gov/pub/lsmith/MedPost/medpost.tar.gz