PDB-SQL: a storage engine for macromolecular data
ACM-SE 45 Proceedings of the 45th annual southeast regional conference
Integrating multi-level molecular simulations across heterogeneous resources
GRID '07 Proceedings of the 8th IEEE/ACM International Conference on Grid Computing
The EDML format to exchange energy profiles of protein molecular structures
ICIC'09 Proceedings of the 5th international conference on Emerging intelligent computing technology and applications
Ontological foundation for protein data models
OTM'05 Proceedings of the 2005 OTM Confederated international conference on On the Move to Meaningful Internet Systems
Towards semantic interoperability of protein data sources
OTM'06 Proceedings of the 2006 international conference on On the Move to Meaningful Internet Systems: AWeSOMe, CAMS, COMINF, IS, KSinBIT, MIOS-CIAO, MONET - Volume Part II
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Summary: The Protein Data Bank (PDB) has recently released versions of the PDB Exchange dictionary and the PDB archival data files in XML format collectively named PDBML. The automated generation of these XML files is driven by the data dictionary infrastructure in use at the PDB. The correspondences between the PDB dictionary and the XML schema metadata are described as well as the XML representations of PDB dictionaries and data files. Availability: The current software translated XML schema file is located at http://deposit.pdb.org/pdbML/pdbx-v1.000.xsd, and on the PDB mmCIF resource page at http://deposit.pdb.org/mmcif/. PDBML files are stored on the PDB beta ftp site at ftp://beta.rcsb.org/pub/pdb/uniformity/data/XML Contact: jwest@rcsb.rutgers.edu