CGH-Explorer: a program for analysis of array-CGH data

Authors:
Ole Christian Lingjærde;Lars O. Baumbusch;Knut Liestøl;Ingrid K. Glad;Anne-Lise Børresen-Dale
Affiliations:
Department of Informatics, University of Oslo PO Box 1080 Blindern, N-0316 Oslo, Norway;Department of Genetics, Institute for Cancer Research, Norwegian Radium Hospital Montebello, N-0310 Oslo, Norway;Department of Informatics, University of Oslo PO Box 1080 Blindern, N-0316 Oslo, Norway;Department of Mathematics, University of Oslo PO Box 1053 Blindern, N-0316 Oslo, Norway;Department of Genetics, Institute for Cancer Research, Norwegian Radium Hospital Montebello, N-0310 Oslo, Norway
Venue:
Bioinformatics
Year:
2005

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Abstract

Summary: CGH-Explorer is a program for visualization and statistical analysis of microarray-based comparative genomic hybridization (array-CGH) data. The program has preprocessing facilities, tools for graphical exploration of individual arrays or groups of arrays, and tools for statistical identification of regions of amplification and deletion. Availability: The program is available as Java class files that runs on any platform with the Java 2 runtime environment (J2SE JRE) installed, and as a Windows executable. Java source files are also available. See http://www.ifi.uio.no/bioinf/Papers/CGH/ Contact: ole@ifi.uio.no