Multiobjective Optimization in Bioinformatics and Computational Biology
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Phylogeny Inference Using a Multi-objective Evolutionary Algorithm with Indirect Representation
SEAL '08 Proceedings of the 7th International Conference on Simulated Evolution and Learning
A multi-objective evolutionary approach for phylogenetic inference
EMO'07 Proceedings of the 4th international conference on Evolutionary multi-criterion optimization
Parallel multi-objective approaches for inferring phylogenies
EvoBIO'10 Proceedings of the 8th European conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics
Inferring phylogenetic trees using a multiobjective artificial bee colony algorithm
EvoBIO'12 Proceedings of the 10th European conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics
TPNC'12 Proceedings of the First international conference on Theory and Practice of Natural Computing
A multiobjective proposal based on the firefly algorithm for inferring phylogenies
EvoBIO'13 Proceedings of the 11th European conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics
Proceedings of the 15th annual conference companion on Genetic and evolutionary computation
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Evolutionary relationships among species are usually (1) illustrated by means of a phylogenetic tree and (2) inferred by optimising some measure of fitness, such as the total evolutionary distance between species or the likelihood of the tree (given a model of the evolutionary process and a data set). The combinatorial complexity of inferring the topology of the best tree makes phylogenetic inference an ideal candidate for evolutionary algorithms. However, difficulties arise when different data sets provide conflicting information about the inferred `best' tree(s). We apply the techniques of multi-objective optimisation to phylogenetic inference for the first time. We use the simplest model of evolution and a four species problem to illustrate the method.