Algorithms for clustering data
Algorithms for clustering data
A Comparative Analysis of Methods for Pruning Decision Trees
IEEE Transactions on Pattern Analysis and Machine Intelligence
Mining the most interesting rules
KDD '99 Proceedings of the fifth ACM SIGKDD international conference on Knowledge discovery and data mining
Navigating high-dimensional spaces to support design steering
Proceedings of the conference on Visualization '00
On Median Graphs: Properties, Algorithms, and Applications
IEEE Transactions on Pattern Analysis and Machine Intelligence - Graph Algorithms and Computer Vision
Multi-Objective Optimization Using Evolutionary Algorithms
Multi-Objective Optimization Using Evolutionary Algorithms
Genetic Algorithms for Multiobjective Optimization: FormulationDiscussion and Generalization
Proceedings of the 5th International Conference on Genetic Algorithms
Inferring Phylogenetic Trees Using Evolutionary Algorithms
PPSN VII Proceedings of the 7th International Conference on Parallel Problem Solving from Nature
Multi-criterion optimization for genetic network modeling
Signal Processing - Special issue: Genomic signal processing
Performance trade-off analysis of analog circuits by normal-boundary intersection
Proceedings of the 40th annual Design Automation Conference
Multi-objective evolutionary algorithms: introducing bias among Pareto-optimal solutions
Advances in evolutionary computing
ICDAR '03 Proceedings of the Seventh International Conference on Document Analysis and Recognition - Volume 2
Cluster ensembles --- a knowledge reuse framework for combining multiple partitions
The Journal of Machine Learning Research
Bounding the effect of noise in multiobjective learning classifier systems
Evolutionary Computation
Speeding up backpropagation using multiobjective evolutionary algorithms
Neural Computation
Multi-objective rule mining using genetic algorithms
Information Sciences: an International Journal - Special issue: Soft computing data mining
Feature Selection for Unsupervised Learning
The Journal of Machine Learning Research
Pareto-Optimal Methods for Gene Ranking
Journal of VLSI Signal Processing Systems
Biclustering Algorithms for Biological Data Analysis: A Survey
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Bioinformatics—an introduction for computer scientists
ACM Computing Surveys (CSUR)
A critical review of multi-objective optimization in data mining: a position paper
ACM SIGKDD Explorations Newsletter
Semi-supervised protein classification using cluster kernels
Bioinformatics
Clustering Ensembles: Models of Consensus and Weak Partitions
IEEE Transactions on Pattern Analysis and Machine Intelligence
Multi-objective evolutionary algorithms and phylogenetic inference with multiple data sets
Soft Computing - A Fusion of Foundations, Methodologies and Applications
Multicriteria Optimization
On semi-supervised clustering via multiobjective optimization
Proceedings of the 8th annual conference on Genetic and evolutionary computation
Multi-class ROC analysis from a multi-objective optimisation perspective
Pattern Recognition Letters - Special issue: ROC analysis in pattern recognition
Evolutionary Algorithms for Solving Multi-Objective Problems (Genetic and Evolutionary Computation)
Evolutionary Algorithms for Solving Multi-Objective Problems (Genetic and Evolutionary Computation)
Multicriteria gene screening for analysis of differential expression with DNA microarrays
EURASIP Journal on Applied Signal Processing
Evolutionary model selection in unsupervised learning
Intelligent Data Analysis
Multiobjective optimization of combinatorial libraries
IBM Journal of Research and Development
A hybrid promoter analysis methodology for prokaryotic genomes
Fuzzy Sets and Systems
Guiding single-objective optimization using multi-objective methods
EvoWorkshops'03 Proceedings of the 2003 international conference on Applications of evolutionary computing
Multi-Objective evolutionary algorithm for discovering peptide binding motifs
EuroGP'06 Proceedings of the 2006 international conference on Applications of Evolutionary Computing
Multi-objective model selection for support vector machines
EMO'05 Proceedings of the Third international conference on Evolutionary Multi-Criterion Optimization
Multi-objective model optimization for inferring gene regulatory networks
EMO'05 Proceedings of the Third international conference on Evolutionary Multi-Criterion Optimization
EMO'05 Proceedings of the Third international conference on Evolutionary Multi-Criterion Optimization
Threshold tuning for improved classification association rule mining
PAKDD'05 Proceedings of the 9th Pacific-Asia conference on Advances in Knowledge Discovery and Data Mining
Multiple semi-flexible 3d superposition of drug-sized molecules
CompLife'05 Proceedings of the First international conference on Computational Life Sciences
Computational intelligence in bioinformatics
Transactions on Rough Sets III
Multiobjective evolutionary optimization of DNA sequences for reliable DNA computing
IEEE Transactions on Evolutionary Computation
IEEE Transactions on Evolutionary Computation
An Evolutionary Approach to Multiobjective Clustering
IEEE Transactions on Evolutionary Computation
Pareto evolutionary neural networks
IEEE Transactions on Neural Networks
Multiobjective Optimization
Phylogeny Inference Using a Multi-objective Evolutionary Algorithm with Indirect Representation
SEAL '08 Proceedings of the 7th International Conference on Simulated Evolution and Learning
Guest editorial: Computational intelligence and machine learning in bioinformatics
Artificial Intelligence in Medicine
IWANN '09 Proceedings of the 10th International Work-Conference on Artificial Neural Networks: Part I: Bio-Inspired Systems: Computational and Ambient Intelligence
CEC'09 Proceedings of the Eleventh conference on Congress on Evolutionary Computation
Closed-loop evolutionary multiobjective optimization
IEEE Computational Intelligence Magazine
A multi-objective evolutionary approach for phylogenetic inference
EMO'07 Proceedings of the 4th international conference on Evolutionary multi-criterion optimization
EMO'07 Proceedings of the 4th international conference on Evolutionary multi-criterion optimization
Identification of Full and Partial Class Relevant Genes
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Research Article: Ranking of microRNA target prediction scores by Pareto front analysis
Computational Biology and Chemistry
Multiobjective optimization applied to the eradication of persistent pathogens
IEEE Transactions on Evolutionary Computation - Special issue on preference-based multiobjective evolutionary algorithms
Designing a multi-label kernel machine with two-objective optimization
AICI'10 Proceedings of the 2010 international conference on Artificial intelligence and computational intelligence: Part I
Digital IIR filter design using multi-objective optimization evolutionary algorithm
Applied Soft Computing
Multi-objective genetic algorithm evaluation in feature selection
EMO'11 Proceedings of the 6th international conference on Evolutionary multi-criterion optimization
Comparison of parallel multi-objective approaches to protein structure prediction
The Journal of Supercomputing
Multiobjective Optimization Based-Approach for Discovering Novel Cancer Therapies
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Parameter Estimation Using Metaheuristics in Systems Biology: A Comprehensive Review
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Chapter 15: search computing and the life sciences
Search Computing
Inferring phylogenetic trees using a multiobjective artificial bee colony algorithm
EvoBIO'12 Proceedings of the 10th European conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics
Derivative scores from site accessibility and ranking of miRNA target predictions
International Journal of Bioinformatics Research and Applications
ISoLA'12 Proceedings of the 5th international conference on Leveraging Applications of Formal Methods, Verification and Validation: applications and case studies - Volume Part II
A multiobjective proposal based on the firefly algorithm for inferring phylogenies
EvoBIO'13 Proceedings of the 11th European conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics
Pareto Optimality in Organelle Energy Metabolism Analysis
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
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This paper reviews the application of multiobjective optimization in the fields of bioinformatics and computational biology. A survey of existing work, organized by application area, forms the main body of the review, following an introduction to the key concepts in multiobjective optimization. An original contribution of the review is the identification of five distinct "contexts,” giving rise to multiple objectives: These are used to explain the reasons behind the use of multiobjective optimization in each application area and also to point the way to potential future uses of the technique.