Fully automated biomedical image segmentation by self-organized model adaptation

  • Authors:

  • Axel Wismüller;Frank Vietze;Johannes Behrends;Anke Meyer-Baese;Maximilian Reiser;Helge Ritter

  • Affiliations:

  • Institut für Klinische Radiologie, Ludwig-Maximilians-Universität München, Klinikum Innenstadt, Ziemessenstrasse 1, München 80336, Germany and Florida State University, Tallaha ...;Institut für Klinische Radiologie, Ludwig-Maximilians-Universität München, Klinikum Innenstadt, Ziemessenstrasse 1, München 80336, Germany;Institut für Klinische Radiologie, Ludwig-Maximilians-Universität München, Klinikum Innenstadt, Ziemessenstrasse 1, München 80336, Germany;Florida State University, Tallahassee, FL;Institut für Klinische Radiologie, Ludwig-Maximilians-Universität München, Klinikum Innenstadt, Ziemessenstrasse 1, München 80336, Germany;AG Neuroinformatik, Universität Bielefeld, Bielefeld, Germany

  • Venue:
  • Neural Networks - 2004 Special issue: New developments in self-organizing systems
  • Year:
  • 2004

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Abstract

In this paper, we present a fully automated image segmentation method based on an algorithm that provides adaptive plasticity in function approximation problems: the deformable (feature) map (DM) algorithm. The DM approach reduces a class of similar function approximation problems to the explicit supervised one-shot training of a single data set. This is followed by a subsequent, appropriate similarity transformation, which is based on a self-organized deformation of the underlying multidimensional probability distributions. We apply this algorithm to the real-world problem of fully automated voxel-based multispectral image segmentation, employing magnetic resonance data sets of the human brain. In contrast to previous segmentation approaches, the knowledge obtained within the segmentation procedure of a single prototypical reference data set can be re-utilized for the segmentation of new, 'similar' data employing a strategy of incremental adaptive learning based on the DM algorithm. Thus, we obtain a fully automatic segmentation method that does neither require manual contour tracing of training regions, visual classification of voxel clusters, nor any other kind of human intervention. Our application demonstrates that flexible learning by a strategy of self-organized incremental model adaptation can contribute to increase the efficiency and practicability of biomedical image processing systems.