Dynamic multigrain parallelization on the cell broadband engine
Proceedings of the 12th ACM SIGPLAN symposium on Principles and practice of parallel programming
Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell
Journal of VLSI Signal Processing Systems
Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L
Proceedings of the 2007 ACM/IEEE conference on Supercomputing
Large-scale phylogenetic analysis on current HPC architectures
Scientific Programming - Large-Scale Programming Tools and Environments
PRIB '08 Proceedings of the Third IAPR International Conference on Pattern Recognition in Bioinformatics
Computational Challenges on Grid Computing for Workflows Applied to Phylogeny
IWANN '09 Proceedings of the 10th International Work-Conference on Artificial Neural Networks: Part II: Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living
ACOPHY: a simple and general ant colony optimization approach for phylogenetic tree reconstruction
ANTS'10 Proceedings of the 7th international conference on Swarm intelligence
Phylospaces: reconstructing evolutionary trees in tuple space
IPDPS'06 Proceedings of the 20th international conference on Parallel and distributed processing
Phylogenetic models of rate heterogeneity: a high performance computing perspective
IPDPS'06 Proceedings of the 20th international conference on Parallel and distributed processing
Parallel multi-objective approaches for inferring phylogenies
EvoBIO'10 Proceedings of the 8th European conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics
DAGwoman: enabling DAGMan-like workflows on non-Condor platforms
Proceedings of the 1st ACM SIGMOD Workshop on Scalable Workflow Execution Engines and Technologies
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Summary: IQPNNI is a program to infer maximum-likelihood phylogenetic trees from DNA or protein data with a large number of sequences. We present an improved and MPI-parallel implementation showing very good scaling and speedup behavior. Availability: IQPNNI (http://www.bi.uni-duesseldorf.de/software/iqpnni) is written in C++, executable on UNIX/Linux, Windows and MacOS systems. (Free) MPI libraries can be found at http://www.lam-mpi.org/mpi/implementations/. Contact: haeseler@cs.uni-duesseldorf.de