The TSIMMIS Approach to Mediation: Data Models and Languages
Journal of Intelligent Information Systems - Special issue: next generation information technologies and systems
XML-based information mediation with MIX
SIGMOD '99 Proceedings of the 1999 ACM SIGMOD international conference on Management of data
Data on the Web: from relations to semistructured data and XML
Data on the Web: from relations to semistructured data and XML
MOCHA: a self-extensible database middleware system for distributed data sources
SIGMOD '00 Proceedings of the 2000 ACM SIGMOD international conference on Management of data
Don't Scrap It, Wrap It! A Wrapper Architecture for Legacy Data Sources
VLDB '97 Proceedings of the 23rd International Conference on Very Large Data Bases
Optimizing Queries Across Diverse Data Sources
VLDB '97 Proceedings of the 23rd International Conference on Very Large Data Bases
Building Light-Weight Wrappers for Legacy Web Data-Sources Using W4F
VLDB '99 Proceedings of the 25th International Conference on Very Large Data Bases
BIBE '03 Proceedings of the 3rd IEEE Symposium on BioInformatics and BioEngineering
Knowledge-Based Integration of Neuroscience Data Sources
SSDBM '00 Proceedings of the 12th International Conference on Scientific and Statistical Database Management
Scaling heterogeneous databases and the design of Disco
ICDCS '96 Proceedings of the 16th International Conference on Distributed Computing Systems (ICDCS '96)
Mining association rules from biological databases: Research Articles
Journal of the American Society for Information Science and Technology - Bioinformatics
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In this work we present an architecture for XML-based mediator systems and a framework for helping systems developers in the construction of mediator-services for the integration of heterogeneous data sources. A unique feature of our architecture is its capability to manage (proprietary) user's software tools and algorithms, modelled as Extended Value Added Services (EVASs), and integrated in the data flow. The mediator offers a view of the system as a single data source where EVASs are readily available for enhancing query processing. A Web-based graphic interface has been developed to allow dynamic and flexible EVASs inter-connection, thus creating complex distributed bioinformatics machines. The feasibility and usefulness of our ideas has been validated by the development of a mediator system (Bio-Broker) and by a diverse set of applications aimed at combining gene expression data with genomic, sequence-based and structural information, so as to provide a general, transparent and powerful solution that integrates data analysis tools and algorithms. Copyright © 2006 John Wiley & Sons, Ltd.