Text Mining for Biology And Biomedicine

Enabling more sophisticated gene expression analysis for understanding diseases and optimizing treatments

ACM SIGKDD Explorations Newsletter - Special issue on data mining for health informatics

Connecting wikis and natural language processing systems

Proceedings of the 2007 international symposium on Wikis

A Hybrid, Multi-dimensional Recommender for Journal Articles in a Scientific Digital Library

WI-IATW '07 Proceedings of the 2007 IEEE/WIC/ACM International Conferences on Web Intelligence and Intelligent Agent Technology - Workshops

Methodological Review: Extracting interactions between proteins from the literature

Journal of Biomedical Informatics

Enhanced semantic access to the protein engineering literature using ontologies populated by text mining

International Journal of Bioinformatics Research and Applications

Kleio: a knowledge-enriched information retrieval system for biology

Proceedings of the 31st annual international ACM SIGIR conference on Research and development in information retrieval

The socio-economics of software architecture

Automated Software Engineering

Do HCI and NLP interact?

CHI '09 Extended Abstracts on Human Factors in Computing Systems

BorderFlow: A Local Graph Clustering Algorithm for Natural Language Processing

CICLing '09 Proceedings of the 10th International Conference on Computational Linguistics and Intelligent Text Processing

Molecular interactions: On the ambiguity of ordinary statements in biomedical literature

Applied Ontology - Biomedical Ontology in Action

Finding optimal parameters for edit distance based sequence classification is NP-hard

Proceedings of the KDD-09 Workshop on Statistical and Relational Learning in Bioinformatics

A memory-based learning approach to event extraction in biomedical texts

BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task

Selecting an ontology for biomedical text mining

BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing

Evaluating and combining biomedical named entity recognition systems

BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing

Automatically extracting cancer disease characteristics from pathology reports into a Disease Knowledge Representation Model

Journal of Biomedical Informatics

Collaborative text-annotation resource for disease-centered relation extraction from biomedical text

Journal of Biomedical Informatics

Discovering genes-diseases associations from specialized literature using the grid

IEEE Transactions on Information Technology in Biomedicine - Special section on biomedical informatics

William Hersh: Information retrieval: a health and biomedical perspective, 3rd ed

Information Retrieval

Domain analysis with text mining: Analysis of digital library research trends using profiling methods

Journal of Information Science

BioLMiner System: Interaction Normalization Task and Interaction Pair Task in the BioCreative II.5 Challenge

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

Automatic identification of biomedical concepts in spanish-language unstructured clinical texts

Proceedings of the 1st ACM International Health Informatics Symposium

An environment for data analysis in biomedical domain: information extraction for decision support systems

IEA/AIE'10 Proceedings of the 23rd international conference on Industrial engineering and other applications of applied intelligent systems - Volume Part I

Ontology learning from biomedical natural language documents using UMLS

Expert Systems with Applications: An International Journal

Vocabularies and Retrieval Tools in Biomedicine: Disentangling the Terminological Knot

Journal of Medical Systems

Semantic text mining for lignocellulose research

Proceedings of the ACM fifth international workshop on Data and text mining in biomedical informatics

From graphs to events: a subgraph matching approach for information extraction from biomedical text

BioNLP Shared Task '11 Proceedings of the BioNLP Shared Task 2011 Workshop

A machine learning-based system to normalise gene mentions to unique database identifiers

International Journal of Data Mining and Bioinformatics

Legal language and legal knowledge management applications

Semantic Processing of Legal Texts

Summary of Product Characteristics content extraction for a safe drugs usage

Journal of Biomedical Informatics

A multi-strategy approach to biological named entity recognition

Expert Systems with Applications: An International Journal

Developing multilingual text mining workflows in UIMA and u-compare

NLDB'12 Proceedings of the 17th international conference on Applications of Natural Language Processing and Information Systems

A mutation-centric approach to identifying pharmacogenomic relations in text

Journal of Biomedical Informatics

A three-way perspective on scientific discourse annotation for knowledge extraction

ACL '12 Proceedings of the Workshop on Detecting Structure in Scholarly Discourse

BioOntoVerb: A top level ontology based framework to populate biomedical ontologies from texts

Knowledge-Based Systems

Text Mining of Protein Phosphorylation Information Using a Generalizable Rule-Based Approach

Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics

"Mining events from the literature for bioinformatics applications" by S. Ananiadou, P. Thompson, and R. Nawaz; with Martin Vesely as coordinator

ACM SIGWEB Newsletter

Smart Health and Wellbeing

ACM Transactions on Management Information Systems (TMIS) - Special Issue on Informatics for Smart Health and Wellbeing

Semantic MEDLINE: An advanced information management application for biomedicine

Information Services and Use - NFAIS 2011 and APE 2011