The study of applying a systematic procedure based on SOFM clustering technique into organism clustering

Authors:
Kun-Lin Hsieh;Cheng-Chang Jeng;I-Ching Yang;Yan-Kwang Chen;Chun-Nan Lin
Affiliations:
Department of Information Management, National Taitung University, 684, Sec. 1, Chung Hua Road, Taitung, Taiwan, ROC;Department of Elementary Education, National Taitung University, 684, Sec. 1, Chung Hua Road, Taitung, Taiwan, ROC;Department of Natural Science Education, National Taitung University, 684, Sec. 1, Chung Hua Road, Taitung, Taiwan, ROC;Department of Logistic Engineering Management, National Taichung Institute of Technology, 129 Sanmin Road, Sec. 3, Taichung, Taiwan, ROC;Department of Information Management, National Chung Cheng University, 168 University Road, Min-Hsiung Chia-Yi, Taiwan, ROC
Venue:
Expert Systems with Applications: An International Journal
Year:
2007

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Abstract

In biological industry, the biological organisms are frequently assumed that the coding structure of nucleotide sequences is different. That is, we can obtain the useful information about the clustering of biological organisms by means of analyzing the coding structure of nucleotide sequences. The primary contribution of such analysis can be regarded as the understanding for the origin of living organisms from the viewpoint of bioinformatics. In this article, we proposed a systematic procedure to address such issue by combining the data transformation, dimension reduction and clustering technique to DNA sequence. The biologists can apply the proposed procedure to get the initial sense for the classification of biological organisms, and it will speed up their analytic action. Besides, an illustrative example will be applied to demonstrate the feasibility and rationality of the proposed procedure in this article.