Brief communication: Computational characterization and design of SARS coronavirus receptor recognition and antibody neutralization

  • Authors:
  • Yuan Zhang;Nan Zheng;Yang Zhong

  • Affiliations:
  • School of Life Sciences, Fudan University, Shanghai 200433, China;Division of Viral Immunology, Center for AIDS Research, Kumamoto University, 2-2-1 Honjo, Kumamoto 860-0811, Japan;School of Life Sciences, Fudan University, Shanghai 200433, China

  • Venue:
  • Computational Biology and Chemistry
  • Year:
  • 2007

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Abstract

The sequential determination of crystal structures of the SARS coronavirus spike receptor-binding domain (RBD) in complex with its cellular receptor or neutralizing antibody opened a door for the design and development of antiviral competitive inhibitors. Based on those complex structures, we conduct computational characterization and design of RBD-mediated receptor recognition and antibody neutralization. The comparisons between computational predictions and experimental evidences validate our structural bioinformatics protocols. And the calculations predict a number of single substitutions on RBD, receptor or antibody that could remarkably elevate the binding affinities of those complexes. It is reasonable to anticipate our structure-based computation-derived hypotheses could be informative to the future biochemical and immunological tests.