Generative communication in Linda
ACM Transactions on Programming Languages and Systems (TOPLAS)
Context and consciousness: activity theory and human-computer interaction
Context and consciousness: activity theory and human-computer interaction
Growing artificial societies: social science from the bottom up
Growing artificial societies: social science from the bottom up
Coordination for Internet Application Development
Autonomous Agents and Multi-Agent Systems
Agent-Based Modeling vs. Equation-Based Modeling: A Case Study and Users' Guide
Proceedings of the First International Workshop on Multi-Agent Systems and Agent-Based Simulation
Uses of Multiagents Systems for Simulation of MAPK Pathway
BIBE '03 Proceedings of the 3rd IEEE Symposium on BioInformatics and BioEngineering
A multi-agent system for the quantitative simulation of biological networks
AAMAS '03 Proceedings of the second international joint conference on Autonomous agents and multiagent systems
Coordination Artifacts: Environment-Based Coordination for Intelligent Agents
AAMAS '04 Proceedings of the Third International Joint Conference on Autonomous Agents and Multiagent Systems - Volume 1
Modelling biochemical pathways through enhanced π-calculus
Theoretical Computer Science - Special issue: Computational systems biology
BioAmbients: an abstraction for biological compartments
Theoretical Computer Science - Special issue: Computational systems biology
Modeling dynamic environments in multi-agent simulation
Autonomous Agents and Multi-Agent Systems
Supporting Action-at-a-distance in Situated Cellular Agents
Fundamenta Informaticae
Agens Faber: Toward a Theory of Artefacts for MAS
Electronic Notes in Theoretical Computer Science (ENTCS)
CArtAgO: a framework for prototyping artifact-based environments in MAS
E4MAS'06 Proceedings of the 3rd international conference on Environments for multi-agent systems III
Multi-agent based simulation: where are the agents?
MABS'02 Proceedings of the 3rd international conference on Multi-agent-based simulation II
Extending time management support for multi-agent systems
MABS'04 Proceedings of the 2004 international conference on Multi-Agent and Multi-Agent-Based Simulation
A multi-agent system for modelling carbohydrate oxidation in cell
ICCSA'05 Proceedings of the 2005 international conference on Computational Science and Its Applications - Volume Part II
Multidisciplinary investigation into adult stem cell behavior
Transactions on Computational Systems Biology III
An agent-oriented conceptual framework for systems biology
Transactions on Computational Systems Biology III
Abstract machines of systems biology
Transactions on Computational Systems Biology III
Combining state-based and scenario-based approaches in modeling biological systems
CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
Distributed workflow upon linkable coordination artifacts
COORDINATION'06 Proceedings of the 8th international conference on Coordination Models and Languages
Programming MAS with artifacts
ProMAS'05 Proceedings of the Third international conference on Programming Multi-Agent Systems
Artifacts in the A&A meta-model for multi-agent systems
Autonomous Agents and Multi-Agent Systems
25 years of applications of logic programming in Italy
A 25-year perspective on logic programming
Modeling and simulation of agent-based complex systems and application to natural disasters
Proceedings of the 8th ACM workshop on Performance monitoring and measurement of heterogeneous wireless and wired networks
Towards of complex natural disasters systems framework
Proceedings of the 2013 Research in Adaptive and Convergent Systems
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Systems Biology (SB) promotes a system-level understanding ofbiological systems, and requires modelling and simulation tools foranalysing biological systems dynamics. The articulation ofMultiagent Systems (MASs) in terms of multiple, distributed andautonomous computational entities makes MAS a seemingly fitparadigm in SB. In this paper we adopt the Agents and Artefacts(A&A) metamodel where the notions of agent, artefact andworkspace are taken as the basic bricks for MASs as the ontologicalfoundation for our Multiagent-based Simulation (MABS) framework,and discuss how this impacts on SB. After recasting the A&Aabstractions within the domain and design models, we specialiseA&A within the SB context, and show an operational model basedon the TuCSoN agent coordination infrastructure, upon which oursimulation framework is implemented. As a case study, we model thewell-studied metabolic pathway of glycolysis, and present someresults of the simulation.