Journal of Computer and System Sciences
Neural Networks for Pattern Recognition
Neural Networks for Pattern Recognition
Membrane Computing: An Introduction
Membrane Computing: An Introduction
Genetic Programming IV: Routine Human-Competitive Machine Intelligence
Genetic Programming IV: Routine Human-Competitive Machine Intelligence
COPASI---a COmplex PAthway SImulator
Bioinformatics
Theoretical Computer Science
Discrete solutions to differential equations by metabolic P systems
Theoretical Computer Science
Structure and parameter estimation for cell systems biology models
Proceedings of the 10th annual conference on Genetic and evolutionary computation
The metabolic algorithm for P systems: Principles and applications
Theoretical Computer Science
Psim: a computational platform for metabolic P systems
WMC'07 Proceedings of the 8th international conference on Membrane computing
Discrete simulations of biochemical dynamics
DNA13'07 Proceedings of the 13th international conference on DNA computing
Towards a p systems pseudomonas quorum sensing model
WMC'06 Proceedings of the 7th international conference on Membrane Computing
Evolution and oscillation in p systems: applications to biological phenomena
WMC'04 Proceedings of the 5th international conference on Membrane Computing
WMC'09 Proceedings of the 10th international conference on Membrane Computing
Metabolic p system flux regulation by artificial neural networks
WMC'09 Proceedings of the 10th international conference on Membrane Computing
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In this work the formalism of metabolic P systems is employed as a basis of a new computational framework for modeling biological networks. The proposed software is a virtual laboratory, called MetaPlab, which supports the synthesis of metabolic P systems by means of an extensible plugin-based architecture. The Java implementation of the software is outlined and a specific plugin at work is described to highlight the internal functioning of the whole architecture.