Computation at the edge of chaos: phase transitions and emergent computation
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A photosynthetic process modelled by a metabolic P system
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XML representation of metabolic P systems
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Psim: a computational platform for metabolic P systems
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Goldbeter's mitotic oscillator entirely modeled by MP systems
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Data analysis pipeline from laboratory to MP models
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MP systems approaches to biochemical dynamics: biological rhythms and oscillations
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Mitotic oscillators as MP graphs
WMC'06 Proceedings of the 7th international conference on Membrane Computing
A protein substructure based p system for description and analysis of cell signalling networks
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P systems and the modeling of biochemical oscillations
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WMC'09 Proceedings of the 10th international conference on Membrane Computing
Regulation and covering problems in MP systems
WMC'09 Proceedings of the 10th international conference on Membrane Computing
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An outline of MP modeling framework
CMC'12 Proceedings of the 13th international conference on Membrane Computing
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Some computational aspects and behavioral patterns of P systems are considered, emphasizing dynamical properties that turn useful in characterizing the behavior of biological and biochemical systems. A framework called state transition dynamics is outlined in which general dynamical concepts are formulated in completely discrete terms. A metabolic algorithm is defined which computes the evolution of P systems modeling important phenomena of biological interest once provided with the information on the initial state and reactivity parameters, or growing factors. Relationships existing between P systems and discrete linear systems are investigated. Finally, exploratory considerations are addressed about the possible use of P systems in characterizing the oscillatory behavior of biological regulatory networks described by metabolic graphs.