On-line construction of position heaps

  • Authors:
  • Gregory Kucherov

  • Affiliations:
  • Université Paris-Est & CNRS, Laboratoire d'Informatique Gaspard Monge, Marne-la-Vallée, France

  • Venue:
  • SPIRE'11 Proceedings of the 18th international conference on String processing and information retrieval
  • Year:
  • 2011

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Abstract

We propose a simple linear-time on-line algorithm for constructing a position heap for a string [EMOW11]. Our definition of position heap differs slightly from the one proposed in [EMOW11] in that it considers the suffixes ordered in the descending order of length. Our construction is based on classic suffix pointers and resembles the Ukkonen's algorithm for suffix trees [Ukk95]. Using suffix pointers, the position heap can be extended into the augmented position heap that allows for a linear-time string matching algorithm [EMOW11].