Multiple genome rearrangements
RECOMB '98 Proceedings of the second annual international conference on Computational molecular biology
Active pages: a computation model for intelligent memory
Proceedings of the 25th annual international symposium on Computer architecture
Web document clustering: a feasibility demonstration
Proceedings of the 21st annual international ACM SIGIR conference on Research and development in information retrieval
Formulations and hardness of multiple sorting by reversals
RECOMB '99 Proceedings of the third annual international conference on Computational molecular biology
Sequence homology detection through large scale pattern discovery
RECOMB '99 Proceedings of the third annual international conference on Computational molecular biology
Finding similar regions in many strings
STOC '99 Proceedings of the thirty-first annual ACM symposium on Theory of computing
Pattern Matching Image Compression: Algorithmic and Empirical Results
IEEE Transactions on Pattern Analysis and Machine Intelligence
Proceedings of the tenth annual ACM-SIAM symposium on Discrete algorithms
Recovering evolutionary trees through harmonic greedy triplets
Proceedings of the tenth annual ACM-SIAM symposium on Discrete algorithms
Melodic matching techniques for large music databases
MULTIMEDIA '99 Proceedings of the seventh ACM international conference on Multimedia (Part 1)
RECOMB '00 Proceedings of the fourth annual international conference on Computational molecular biology
STOC '00 Proceedings of the thirty-second annual ACM symposium on Theory of computing
Faster suffix tree construction with missing suffix links
STOC '00 Proceedings of the thirty-second annual ACM symposium on Theory of computing
Near optimal multiple alignment within a band in polynomial time
STOC '00 Proceedings of the thirty-second annual ACM symposium on Theory of computing
Document overlap detection system for distributed digital libraries
DL '00 Proceedings of the fifth ACM conference on Digital libraries
Height in a digital search tree and the longest phrase of the Lempel-Ziv scheme
SODA '00 Proceedings of the eleventh annual ACM-SIAM symposium on Discrete algorithms
Estimating DNA sequence entropy
SODA '00 Proceedings of the eleventh annual ACM-SIAM symposium on Discrete algorithms
A new string-pattern matching algorithm using partitioning and hashing efficiently
Journal of Experimental Algorithmics (JEA)
On the sorting-complexity of suffix tree construction
Journal of the ACM (JACM)
Characterizing the behavior of a program using multiple-length N-grams
Proceedings of the 2000 workshop on New security paradigms
An optimal procedure for gap closing in whole genome shotgun sequencing
RECOMB '01 Proceedings of the fifth annual international conference on Computational biology
Algorithms for phylogenetic footprinting
RECOMB '01 Proceedings of the fifth annual international conference on Computational biology
Edit distance between two RNA structures
RECOMB '01 Proceedings of the fifth annual international conference on Computational biology
RECOMB '01 Proceedings of the fifth annual international conference on Computational biology
Applications of generalized pair hidden Markov models to alignment and gene finding problems
RECOMB '01 Proceedings of the fifth annual international conference on Computational biology
Clustering user queries of a search engine
Proceedings of the 10th international conference on World Wide Web
IEPAD: information extraction based on pattern discovery
Proceedings of the 10th international conference on World Wide Web
A guided tour to approximate string matching
ACM Computing Surveys (CSUR)
Maintenance support tools for JAVA programs: CCFinder and JAAT
ICSE '01 Proceedings of the 23rd International Conference on Software Engineering
External memory algorithms and data structures: dealing with massive data
ACM Computing Surveys (CSUR)
Flexible authentication of XML documents
CCS '01 Proceedings of the 8th ACM conference on Computer and Communications Security
Advances in phonetic word spotting
Proceedings of the tenth international conference on Information and knowledge management
On the closest string and substring problems
Journal of the ACM (JACM)
Secure multi-party computation problems and their applications: a review and open problems
Proceedings of the 2001 workshop on New security paradigms
Proceedings of the 32nd conference on Winter simulation
Trust and the automated assessment of IT skills
SIGCPR '02 Proceedings of the 2002 ACM SIGCPR conference on Computer personnel research
Finding the consensus shape for a protein family
Proceedings of the eighteenth annual symposium on Computational geometry
Improving table compression with combinatorial optimization
SODA '02 Proceedings of the thirteenth annual ACM-SIAM symposium on Discrete algorithms
Succinct representations of lcp information and improvements in the compressed suffix arrays
SODA '02 Proceedings of the thirteenth annual ACM-SIAM symposium on Discrete algorithms
Efficient algorithms for document retrieval problems
SODA '02 Proceedings of the thirteenth annual ACM-SIAM symposium on Discrete algorithms
The string edit distance matching problem with moves
SODA '02 Proceedings of the thirteenth annual ACM-SIAM symposium on Discrete algorithms
Simple approximation algorithm for nonoverlapping local alignments
SODA '02 Proceedings of the thirteenth annual ACM-SIAM symposium on Discrete algorithms
A sub-quadratic sequence alignment algorithm for unrestricted cost matrices
SODA '02 Proceedings of the thirteenth annual ACM-SIAM symposium on Discrete algorithms
Approximate distance oracles for geometric graphs
SODA '02 Proceedings of the thirteenth annual ACM-SIAM symposium on Discrete algorithms
Efficiency of data structures for detecting overlaps in digital documents
ACSC '01 Proceedings of the 24th Australasian conference on Computer science
Suffix vector: space- and time-efficient alternative to suffix trees
ACSC '02 Proceedings of the twenty-fifth Australasian conference on Computer science - Volume 4
Nearest common ancestors: a survey and a new distributed algorithm
Proceedings of the fourteenth annual ACM symposium on Parallel algorithms and architectures
Structural alignment of large—size proteins via lagrangian relaxation
Proceedings of the sixth annual international conference on Computational biology
Haplotyping as perfect phylogeny: conceptual framework and efficient solutions
Proceedings of the sixth annual international conference on Computational biology
Picking alignments from (steiner) trees
Proceedings of the sixth annual international conference on Computational biology
String barcoding: uncovering optimal virus signatures
Proceedings of the sixth annual international conference on Computational biology
Simple and flexible detection of contiguous repeats using a suffix tree
Theoretical Computer Science
Compactly encoding unstructured inputs with differential compression
Journal of the ACM (JACM)
The effectiveness study of various music information retrieval approaches
Proceedings of the eleventh international conference on Information and knowledge management
Limit laws for the height in PATRICIA tries
Journal of Algorithms - Analysis of algorithms
IEEE Internet Computing
Gene Discovery in DNA Sequences
IEEE Intelligent Systems
Recovering Traceability Links between Code and Documentation
IEEE Transactions on Software Engineering
Quasi-median graphs from sets of partitions
Discrete Applied Mathematics
CCFinder: a multilinguistic token-based code clone detection system for large scale source code
IEEE Transactions on Software Engineering
Finding similar regions in many sequences
Journal of Computer and System Sciences - STOC 1999
The longest common subsequence problem for sequences with nested arc annotations
Journal of Computer and System Sciences - Computational biology 2002
A parallel algorithm for pattern discovery in biological sequences
Future Generation Computer Systems - Parallel computing technologies (PaCT-2001)
Haplotypes and informative SNP selection algorithms: don't block out information
RECOMB '03 Proceedings of the seventh annual international conference on Research in computational molecular biology
Automatic information extraction from semi-structured Web pages by pattern discovery
Decision Support Systems - Web retrieval and mining
Database indexing for large DNA and protein sequence collections
The VLDB Journal — The International Journal on Very Large Data Bases
Reducing space for index implementation
Theoretical Computer Science
Tabular parsing and algebraic transformations
Theoretical Computer Science - Algebraic methods in language processing
The level-ancestor problem on pure pointer machines
Information Processing Letters
SODA '03 Proceedings of the fourteenth annual ACM-SIAM symposium on Discrete algorithms
Multidimensional matching and fast search in suffix trees
SODA '03 Proceedings of the fourteenth annual ACM-SIAM symposium on Discrete algorithms
Graph Voronoi Regions for Interfacing Planar Graphs
ICCS '01 Proceedings of the International Conference on Computational Sciences-Part I
IPDPS '02 Proceedings of the 16th International Parallel and Distributed Processing Symposium
Blending of Composite Panel Designs Using Genetic Algorithms
IPDPS '02 Proceedings of the 16th International Parallel and Distributed Processing Symposium
Parallel and Distributed Document Overlap Detection on the Web
PARA '00 Proceedings of the 5th International Workshop on Applied Parallel Computing, New Paradigms for HPC in Industry and Academia
Parallel Algorithms for the Analysis of Biological Sequences
PaCT '01 Proceedings of the 6th International Conference on Parallel Computing Technologies
Space-Economical Construction of Index Structures for All Suffixes of a String
MFCS '02 Proceedings of the 27th International Symposium on Mathematical Foundations of Computer Science
Telcordia's Database Reconciliation and Data Quality Analysis Tool
VLDB '00 Proceedings of the 26th International Conference on Very Large Data Bases
Efficient Index Structures for String Databases
Proceedings of the 27th International Conference on Very Large Data Bases
A Database Index to Large Biological Sequences
Proceedings of the 27th International Conference on Very Large Data Bases
Data Structures for Maintaining Set Partitions
SWAT '00 Proceedings of the 7th Scandinavian Workshop on Algorithm Theory
Generalization of a Suffix Tree for RNA Structural Pattern Matching
SWAT '00 Proceedings of the 7th Scandinavian Workshop on Algorithm Theory
Toward Complete Genome Data Mining in Computational Biology
SWAT '00 Proceedings of the 7th Scandinavian Workshop on Algorithm Theory
Computing the Threshold for q-Gram Filters
SWAT '02 Proceedings of the 8th Scandinavian Workshop on Algorithm Theory
An Optimal Algorithm for Finding NCA on Pure Pointer Machines
SWAT '02 Proceedings of the 8th Scandinavian Workshop on Algorithm Theory
On the Practical Solution of the Reversal Median Problem
WABI '01 Proceedings of the First International Workshop on Algorithms in Bioinformatics
Estimating the Deviation from a Molecular Clock
WABI '02 Proceedings of the Second International Workshop on Algorithms in Bioinformatics
WABI '02 Proceedings of the Second International Workshop on Algorithms in Bioinformatics
The Enhanced Suffix Array and Its Applications to Genome Analysis
WABI '02 Proceedings of the Second International Workshop on Algorithms in Bioinformatics
Extracting Common Motifs under the Levenshtein Measure: Theory and Experimentation
WABI '02 Proceedings of the Second International Workshop on Algorithms in Bioinformatics
MultiProt - A Multiple Protein Structural Alignment Algorithm
WABI '02 Proceedings of the Second International Workshop on Algorithms in Bioinformatics
AMAST '02 Proceedings of the 9th International Conference on Algebraic Methodology and Software Technology
Combinatorics and Algorithms on Low-Discrepancy Roundings of a Real Sequence
ICALP '01 Proceedings of the 28th International Colloquium on Automata, Languages and Programming,
The Longest Common Subsequence Problem for Sequences with Nested Arc Annotations
ICALP '01 Proceedings of the 28th International Colloquium on Automata, Languages and Programming,
Solving the String Statistics Problem in Time O(n log n)
ICALP '02 Proceedings of the 29th International Colloquium on Automata, Languages and Programming
Constructing the Suffix Tree of a Tree with a Large Alphabet
ISAAC '99 Proceedings of the 10th International Symposium on Algorithms and Computation
Representation and Discovery of Vertical Patterns in Music
ICMAI '02 Proceedings of the Second International Conference on Music and Artificial Intelligence
Computing the Quartet Distance between Evolutionary Trees in Time O(n log2 n)
ISAAC '01 Proceedings of the 12th International Symposium on Algorithms and Computation
Suffix Vector: A Space-Efficient Suffix Tree Representation
ISAAC '01 Proceedings of the 12th International Symposium on Algorithms and Computation
ISAAC '01 Proceedings of the 12th International Symposium on Algorithms and Computation
Recognizing and Discovering Complex Events in Sequences
ISMIS '02 Proceedings of the 13th International Symposium on Foundations of Intelligent Systems
Ancestor Problems on Pure Pointer Machines
LATIN '02 Proceedings of the 5th Latin American Symposium on Theoretical Informatics
Applying Pattern Mining to Web Information Extraction
PAKDD '01 Proceedings of the 5th Pacific-Asia Conference on Knowledge Discovery and Data Mining
Automatic Information Extraction for Multiple Singular Web Pages
PAKDD '02 Proceedings of the 6th Pacific-Asia Conference on Advances in Knowledge Discovery and Data Mining
Evaluation of Techniques for Classifying Biological Sequences
PAKDD '02 Proceedings of the 6th Pacific-Asia Conference on Advances in Knowledge Discovery and Data Mining
Pattern Matching over Multi-attribute Data Streams
SPIRE 2002 Proceedings of the 9th International Symposium on String Processing and Information Retrieval
Optimal Exact Strring Matching Based on Suffix Arrays
SPIRE 2002 Proceedings of the 9th International Symposium on String Processing and Information Retrieval
Compact Directed Acyclic Word Graphs for a Sliding Window
SPIRE 2002 Proceedings of the 9th International Symposium on String Processing and Information Retrieval
ECDL '01 Proceedings of the 5th European Conference on Research and Advanced Technology for Digital Libraries
Approximation and Exact Algorithms for Constructing Minimum Ultrametric Trees from Distance Matrices
COCOON '98 Proceedings of the 4th Annual International Conference on Computing and Combinatorics
Generating Necklaces and Strings with Forbidden Substrings
COCOON '00 Proceedings of the 6th Annual International Conference on Computing and Combinatorics
A Greedy Algorithm for Optimal Recombination
COCOON '01 Proceedings of the 7th Annual International Conference on Computing and Combinatorics
Dictionary Look-Up within Small Edit Distance
COCOON '02 Proceedings of the 8th Annual International Conference on Computing and Combinatorics
COCOON '02 Proceedings of the 8th Annual International Conference on Computing and Combinatorics
Inverse Parametric Sequence Alignment
COCOON '02 Proceedings of the 8th Annual International Conference on Computing and Combinatorics
Explicit Control of Diversity and Effective Variation Distance in Linear Genetic Programming
EuroGP '02 Proceedings of the 5th European Conference on Genetic Programming
On Software Maintenance Process Improvement Based on Code Clone Analysis
PROFES '02 Proceedings of the 4th International Conference on Product Focused Software Process Improvement
Interactive Simultaneous Editing of Multiple Text Regions
Proceedings of the General Track: 2002 USENIX Annual Technical Conference
Efficient Implementation of Lazy Suffix Trees
WAE '99 Proceedings of the 3rd International Workshop on Algorithm Engineering
Fast Implementations of Automata Computations
CIAA '00 Revised Papers from the 5th International Conference on Implementation and Application of Automata
GD '99 Proceedings of the 7th International Symposium on Graph Drawing
Invited Presentation: Median Hulls as Steiner Hulls in Rectilinear and Molecular Sequence Spaces
WG '01 Proceedings of the 27th International Workshop on Graph-Theoretic Concepts in Computer Science
Discovering Best Variable-Length-Don't-Care Patterns
DS '02 Proceedings of the 5th International Conference on Discovery Science
DS '02 Proceedings of the 5th International Conference on Discovery Science
Mining from Literary Texts: Pattern Discovery and Similarity Computation
Progress in Discovery Science, Final Report of the Japanese Discovery Science Project
Efficient Data Mining from Large Text Databases
Progress in Discovery Science, Final Report of the Japanese Discovery Science Project
Finding Maximal Quasiperiodicities in Strings
COM '00 Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching
Approximation Algorithms for Hamming Clustering Problems
COM '00 Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching
Incomplete Directed Perfect Phylogeny
COM '00 Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching
Parametric Multiple Sequence Alignment and Phylogeny Construction
COM '00 Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching
Using Suffix Trees for Gapped Motif Discovery
COM '00 Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching
On the Complexity of Determining the Period of a String
COM '00 Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching
Linear Bidirectional On-Line Construction of Affix Trees
COM '00 Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching
Explaining and Controlling Ambiguity in Dynamic Programming
COM '00 Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching
Linear-Time Longest-Common-Prefix Computation in Suffix Arrays and Its Applications
CPM '01 Proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching
CPM '01 Proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching
Efficient Discovery of Proximity Patterns with Suffix Arrays
CPM '01 Proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching
On-Line Construction of Compact Directed Acyclic Word Graphs
CPM '01 Proceedings of the 12th Annual Symposium on Combinatorial Pattern Matching
Space-Economical Algorithms for Finding Maximal Unique Matches
CPM '02 Proceedings of the 13th Annual Symposium on Combinatorial Pattern Matching
Identifying Occurrences of Maximal Pairs in Multiple Strings
CPM '02 Proceedings of the 13th Annual Symposium on Combinatorial Pattern Matching
One-Gapped q-Gram Filtersfor Levenshtein Distance
CPM '02 Proceedings of the 13th Annual Symposium on Combinatorial Pattern Matching
CPM '02 Proceedings of the 13th Annual Symposium on Combinatorial Pattern Matching
Word Searching in Document Images Using Word Portion Matching
DAS '02 Proceedings of the 5th International Workshop on Document Analysis Systems V
Applying an Edit Distance to the Matching of Tree Ring Sequences in Dendrochronology
CPM '99 Proceedings of the 10th Annual Symposium on Combinatorial Pattern Matching
Finding Maximal Pairs with Bounded Gap
CPM '99 Proceedings of the 10th Annual Symposium on Combinatorial Pattern Matching
Eliminating Useless Parts in Semi-structured Documents Using Alternation Counts
DS '01 Proceedings of the 4th International Conference on Discovery Science
Discovering Repetitive Expressions and Affinities from Anthologies of Classical Japanese Poems
DS '01 Proceedings of the 4th International Conference on Discovery Science
Augmenting Suffix Trees, with Applications
ESA '98 Proceedings of the 6th Annual European Symposium on Algorithms
Longest Common Subsequence from Fragments via Sparse Dynamic Programming
ESA '98 Proceedings of the 6th Annual European Symposium on Algorithms
On the Informational Asymmetry between Upper and Lower Bounds for Ultrametric Evolutionary Trees
ESA '99 Proceedings of the 7th Annual European Symposium on Algorithms
Finding Approximate Repetitions under Hamming Distance
ESA '01 Proceedings of the 9th Annual European Symposium on Algorithms
Engineering a Lightweight Suffix Array Construction Algorithm
ESA '02 Proceedings of the 10th Annual European Symposium on Algorithms
Implementing Algebraic Dynamic Programming in the Functional and the Imperative Programming Paradigm
MPC '02 Proceedings of the 6th International Conference on Mathematics of Program Construction
BMCV '02 Proceedings of the Second International Workshop on Biologically Motivated Computer Vision
DEXA '00 Proceedings of the 11th International Conference on Database and Expert Systems Applications
On the Generality of Phylogenies from Incomplete Directed Characters
SWAT '02 Proceedings of the 8th Scandinavian Workshop on Algorithm Theory
Modified PrefixSpan Method for Motif Discovery in Sequence Databases
PRICAI '02 Proceedings of the 7th Pacific Rim International Conference on Artificial Intelligence: Trends in Artificial Intelligence
Ziv Lempel Compression of Huge Natural Language Data Tries Using Suffix Arrays
CPM '99 Proceedings of the 10th Annual Symposium on Combinatorial Pattern Matching
Discovering instances of poetic allusion from anthologies of classical Japanese poems
Theoretical Computer Science
Non-approximability of weighted multiple sequence alignment
Theoretical Computer Science - Computing and combinatorics
Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions
Discrete Applied Mathematics - Special issue: Computational molecular biology series issue IV
On effective classification of strings with wavelets
Proceedings of the eighth ACM SIGKDD international conference on Knowledge discovery and data mining
Finding surprising patterns in a time series database in linear time and space
Proceedings of the eighth ACM SIGKDD international conference on Knowledge discovery and data mining
Data extraction and label assignment for web databases
WWW '03 Proceedings of the 12th international conference on World Wide Web
Multiple sequence alignment using anytime A*
Eighteenth national conference on Artificial intelligence
Handbook of data mining and knowledge discovery
Design and implementation of a string database query language
Information Systems - Special issue: Data management in bioinformatics
Approximate pattern matching and transitive closure logics
Theoretical Computer Science
Video similarity detection for digital rights management
ACSC '03 Proceedings of the 26th Australasian computer science conference - Volume 16
Approximate Pattern Matching is Expressible in Transitive Closure Logic
LICS '00 Proceedings of the 15th Annual IEEE Symposium on Logic in Computer Science
Rapid Large-Scale Oligonucleotide Selection for Microarrays
CSB '02 Proceedings of the IEEE Computer Society Conference on Bioinformatics
Towards Automatic Clustering of Protein Sequences
CSB '02 Proceedings of the IEEE Computer Society Conference on Bioinformatics
DNA Sequence Compression Using the Burrows-Wheeler Transform
CSB '02 Proceedings of the IEEE Computer Society Conference on Bioinformatics
Fast and Sensitive Alignment of Large Genomic Sequences
CSB '02 Proceedings of the IEEE Computer Society Conference on Bioinformatics
Suffix Trees (and Relatives) Come of Age in Bioinformatics
CSB '02 Proceedings of the IEEE Computer Society Conference on Bioinformatics
Finding Maximal Repetitions in a Word in Linear Time
FOCS '99 Proceedings of the 40th Annual Symposium on Foundations of Computer Science
ADC '03 Proceedings of the 14th Australasian database conference - Volume 17
Inferring an original sequence from erroneous copies: a Bayesian approach
APBC '03 Proceedings of the First Asia-Pacific bioinformatics conference on Bioinformatics 2003 - Volume 19
A note on randomized algorithm for string matching with mismatches
Nordic Journal of Computing - Special issue: Selected papers of the Prague Stringology conference (PSC'02), September 23-24, 2002
Bidirectional construction of suffix trees
Nordic Journal of Computing - Special issue: Selected papers of the Prague Stringology conference (PSC'02), September 23-24, 2002
Visualizing Biosequence Data Using Texture Mapping
INFOVIS '02 Proceedings of the IEEE Symposium on Information Visualization (InfoVis'02)
A note on differentiable palindromes
Theoretical Computer Science
Generalizations of suffix arrays to multi-dimensional matrices
Theoretical Computer Science
Generalizations of suffix arrays to multi-dimensional matrices
Theoretical Computer Science
Finding approximate repetitions under Hamming distance
Theoretical Computer Science - Logic and complexity in computer science
Truncated suffix trees and their application to data compression
Theoretical Computer Science
A parallel algorithm for DNA alignment
Crossroads
CSB '03 Proceedings of the IEEE Computer Society Conference on Bioinformatics
SMASHing regulatory sites in DNA by human-mouse sequence comparisons
CSB '03 Proceedings of the IEEE Computer Society Conference on Bioinformatics
CSB '03 Proceedings of the IEEE Computer Society Conference on Bioinformatics
Efficient Reconstruction of Phylogenetic Networks with Constrained Recombination
CSB '03 Proceedings of the IEEE Computer Society Conference on Bioinformatics
Efficient Constrained Multiple Sequence Alignment with Performance Guarantee
CSB '03 Proceedings of the IEEE Computer Society Conference on Bioinformatics
Identifying Regulatory Signals in DNA-Sequences with a Non-statistical Approximation Approach
CSB '03 Proceedings of the IEEE Computer Society Conference on Bioinformatics
The SCP and Compressed Domain Analysis of Biological Sequences
CSB '03 Proceedings of the IEEE Computer Society Conference on Bioinformatics
Fast and Sensitive Probe Selection for DNA Chips Using Jumps in Matching Statistics
CSB '03 Proceedings of the IEEE Computer Society Conference on Bioinformatics
Efficient code distribution in wireless sensor networks
WSNA '03 Proceedings of the 2nd ACM international conference on Wireless sensor networks and applications
Distinguishing string selection problems
Information and Computation
A unifying look at the Apostolico--Giancarlo string-matching algorithm
Journal of Discrete Algorithms
The consensus string problem for a metric is NP-complete
Journal of Discrete Algorithms
A new algorithm for the construction of minimal acyclic DFAs
Science of Computer Programming
Theoretical Computer Science
RNA Secondary structure comparison: exact analysis of the Zhang--Shasha tree edit algorithm
Theoretical Computer Science
Improving table compression with combinatorial optimization
Journal of the ACM (JACM)
Parsing Without a Grammar: Making Sense of Unknown File Formats
ICDM '03 Proceedings of the Third IEEE International Conference on Data Mining
Adaptive duplicate detection using learnable string similarity measures
Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining
Mining data records in Web pages
Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining
Towards the creation of accessibility agents for non-visual navigation of the web
CUU '03 Proceedings of the 2003 conference on Universal usability
Distributed suffix trees and their application to large-scale genomic analysis
ICCMSE '03 Proceedings of the international conference on Computational methods in sciences and engineering
Data structuring application for string problems in biological sequences
ICCMSE '03 Proceedings of the international conference on Computational methods in sciences and engineering
Discovering regularities in biosequences: challenges and applications
ICCMSE '03 Proceedings of the international conference on Computational methods in sciences and engineering
Special issue - Computing patterns in strings: foreword
Fundamenta Informaticae - Special issue on computing patterns in strings
A fast algorithm for optimal alignment between similar ordered trees
Fundamenta Informaticae - Special issue on computing patterns in strings
Journal of Computer Science and Technology
Incorporating bioinformatics in an algorithms course
Proceedings of the 8th annual conference on Innovation and technology in computer science education
Journal of Algorithms
Combinatorics of periods in strings
Journal of Combinatorial Theory Series A
Sparse LCS common substring alignment
Information Processing Letters
Applying an edit distance to the matching of tree ring sequences in dendrochronology
Journal of Discrete Algorithms
The suffix binary search tree and suffix AVL tree
Journal of Discrete Algorithms
A parallel algorithm for the extraction of structured motifs
Proceedings of the 2004 ACM symposium on Applied computing
Random Structures & Algorithms
The Haplotyping problem: an overview of computational models and solutions
Journal of Computer Science and Technology
Honeycomb: creating intrusion detection signatures using honeypots
ACM SIGCOMM Computer Communication Review
MARSYAS: a framework for audio analysis
Organised Sound
Left-to-right parsing and bilexical context-free grammars
NAACL 2000 Proceedings of the 1st North American chapter of the Association for Computational Linguistics conference
RECOMB '04 Proceedings of the eighth annual international conference on Resaerch in computational molecular biology
Constructing chromosome scale suffix trees
APBC '04 Proceedings of the second conference on Asia-Pacific bioinformatics - Volume 29
EMAGEN: an efficient approach to multiple whole genome alignment
APBC '04 Proceedings of the second conference on Asia-Pacific bioinformatics - Volume 29
Exact pattern matching for RNA secondary structures
APBC '04 Proceedings of the second conference on Asia-Pacific bioinformatics - Volume 29
SPINE: Putting Backbone into String Indexing
ICDE '04 Proceedings of the 20th International Conference on Data Engineering
Engineering a Fast Online Persistent Suffix Tree Construction
ICDE '04 Proceedings of the 20th International Conference on Data Engineering
Computing the similarity of two sequences with nested arc annotations
Theoretical Computer Science
Multiple Sequence Alignment with Evolutionary Computation
Genetic Programming and Evolvable Machines
When indexing equals compression: experiments with compressing suffix arrays and applications
SODA '04 Proceedings of the fifteenth annual ACM-SIAM symposium on Discrete algorithms
Reconstructing strings from random traces
SODA '04 Proceedings of the fifteenth annual ACM-SIAM symposium on Discrete algorithms
Discovering all frequent trends in time series
WISICT '04 Proceedings of the winter international synposium on Information and communication technologies
Hardness of approximation for non-overlapping local alignments
Discrete Applied Mathematics
Compact directed acyclic word graphs for a sliding window
Journal of Discrete Algorithms - SPIRE 2002
Replacing suffix trees with enhanced suffix arrays
Journal of Discrete Algorithms - SPIRE 2002
Two-dimensional pattern matching with rotations
Theoretical Computer Science
An algorithm for finding conserved secondary structure motifs in unaligned RNA sequences
Journal of Computer Science and Technology - Special issue on bioinformatics
Verbumculus and the discovery of unusual words
Journal of Computer Science and Technology - Special issue on bioinformatics
Hearsay: enabling audio browsing on hypertext content
Proceedings of the 13th international conference on World Wide Web
Detection of complex temporal patterns over data streams
Information Systems - Special issue: ADBIS 2002: Advances in databases and information systems
Mining events and new name translations from online daily news
Proceedings of the 4th ACM/IEEE-CS joint conference on Digital libraries
An algorithm for analysis of images in spatial information systems
Journal of Automata, Languages and Combinatorics - Special issue: Selected papers of the 13th Australasian workshop on combinatorial algorithms
Computing all repeats using suffix arrays
Journal of Automata, Languages and Combinatorics - Special issue: Selected papers of the 13th Australasian workshop on combinatorial algorithms
An improved algorithm for finding longest repeats with a modified factor oracle
Journal of Automata, Languages and Combinatorics - Special issue: Selected papers of the 13th Australasian workshop on combinatorial algorithms
Predicting the disulfide bonding state of cysteines with combinations of kernel machines
Journal of VLSI Signal Processing Systems - Special issue on signal processing and neural networks for bioinformatics
Following your colleagues' footprints: navigation support with trails in shared directories
Proceedings of the fifteenth ACM conference on Hypertext and hypermedia
Theoretical Computer Science
Combined super-/substring and super-/subsequence problems
Theoretical Computer Science
SBCCI '04 Proceedings of the 17th symposium on Integrated circuits and system design
A discipline of dynamic programming over sequence data
Science of Computer Programming - Methods of software design: Techniques and applications
A hierarchical clustering algorithm for categorical sequence data
Information Processing Letters
Compressed Pattern Matching in DNA Sequences
CSB '04 Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference
FastR: Fast Database Search Tool for Non-Coding RNA
CSB '04 Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference
Multiple RNA Structure Alignment
CSB '04 Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference
Ontology Specific Data Mining Based on Dynamic Grammars
CSB '04 Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference
RNA Motif Search Using the Structure to String (STR2) Method
CSB '04 Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference
Locating All Tandem Repeat Families in a Sequence
CSB '04 Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference
Biclustering Algorithms for Biological Data Analysis: A Survey
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Information Retrieval in Document Image Databases
IEEE Transactions on Knowledge and Data Engineering
Tree-Structured Template Generation for Web Pages
WI '04 Proceedings of the 2004 IEEE/WIC/ACM International Conference on Web Intelligence
SPARE parts: a C++ toolkit for string pattern recognition
Software—Practice & Experience
Proceedings of the 34th conference on Winter simulation: exploring new frontiers
Bioinformatics—an introduction for computer scientists
ACM Computing Surveys (CSUR)
Inverse parametric sequence alignment
Journal of Algorithms
Constructing Suffix Tree for Gigabyte Sequences with Megabyte Memory
IEEE Transactions on Knowledge and Data Engineering
Performance evaluation of a database of repetitive elements in complete genomes
Journal of Systems and Software
A space-efficient algorithm for sequence alignment with inversions and reversals
Theoretical Computer Science - Special papers from: COCOON 2003
Improved Gapped Alignment in BLAST
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
A bioinformatics course in the computer science curriculum
Proceedings of the 2nd annual conference on Mid-south college computing
An O(N^2) Algorithm for Discovering Optimal Boolean Pattern Pairs
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Recognition and analysis of audio for copyright protection: the RAA project
Journal of the American Society for Information Science and Technology - Music information retrieval
Linear-time computation of local periods
Theoretical Computer Science
Linear time algorithms for finding and representing all the tandem repeats in a string
Journal of Computer and System Sciences
New Processor Array Architectures for the Longest Common Subsequence Problem
The Journal of Supercomputing
Computer science and bioinformatics
Communications of the ACM - The disappearing computer
A comparative evaluation of name-matching algorithms
ICAIL '03 Proceedings of the 9th international conference on Artificial intelligence and law
Coarse grained gather and scatter operations with applications
Journal of Parallel and Distributed Computing
Ternary directed acyclic word graphs
Theoretical Computer Science - Implementation and application of automata
Scaled and permuted string matching
Information Processing Letters
A Multiresolution Symbolic Representation of Time Series
ICDE '05 Proceedings of the 21st International Conference on Data Engineering
RC-BLAST: Towards a Portable, Cost-Effective Open Source Hardware Implementation
IPDPS '05 Proceedings of the 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS'05) - Workshop 7 - Volume 08
Bases of Motifs for Generating Repeated Patterns with Wild Cards
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Web data extraction based on partial tree alignment
WWW '05 Proceedings of the 14th international conference on World Wide Web
On the Use of Wavelet Decomposition for String Classification
Data Mining and Knowledge Discovery
Flexible authentication of XML documents
Journal of Computer Security - Special issue on ACM conference on computer and communications security, 2001
Interactive web-wrapper construction for extracting relational information from web documents
WWW '05 Special interest tracks and posters of the 14th international conference on World Wide Web
Combinatorics and algorithms for low-discrepancy, roundings of a real sequence
Theoretical Computer Science - Automata, languages and programming
Space-efficient construction variants of dynamic programming
Nordic Journal of Computing
Partial words and the critical factorization theorem
Journal of Combinatorial Theory Series A
A new approach for gene prediction using comparative sequence analysis
Proceedings of the 2005 ACM symposium on Applied computing
Dynamic dictionary matching and compressed suffix trees
SODA '05 Proceedings of the sixteenth annual ACM-SIAM symposium on Discrete algorithms
Towards a complete characterization of tries
SODA '05 Proceedings of the sixteenth annual ACM-SIAM symposium on Discrete algorithms
Substring compression problems
SODA '05 Proceedings of the sixteenth annual ACM-SIAM symposium on Discrete algorithms
Journal of Computer and System Sciences - Special issue on bioinformatics II
Privacy-preserving distributed k-means clustering over arbitrarily partitioned data
Proceedings of the eleventh ACM SIGKDD international conference on Knowledge discovery in data mining
Selectivity estimation for fuzzy string predicates in large data sets
VLDB '05 Proceedings of the 31st international conference on Very large data bases
Indexing mixed types for approximate retrieval
VLDB '05 Proceedings of the 31st international conference on Very large data bases
Analytical processing of XML documents: opportunities and challenges
ACM SIGMOD Record
Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons
CSB '05 Proceedings of the 2005 IEEE Computational Systems Bioinformatics Conference
PSIST: Indexing Protein Structures Using Suffix Trees
CSB '05 Proceedings of the 2005 IEEE Computational Systems Bioinformatics Conference
On Optimizing Distance-Based Similarity Search for Biological Databases
CSB '05 Proceedings of the 2005 IEEE Computational Systems Bioinformatics Conference
Space efficient search for maximal repetitions
Theoretical Computer Science - Combinatorics on words
A survey on tree edit distance and related problems
Theoretical Computer Science
The intractability of computing the Hamming distance
Theoretical Computer Science
An inexact-suffix-tree-based algorithm for detecting extensible patterns
Theoretical Computer Science - Pattern discovery in the post genome
Algorithms for pattern matching and discovery in RNA secondary structure
Theoretical Computer Science - Pattern discovery in the post genome
Exact matching of RNA secondary structure patterns
Theoretical Computer Science - Pattern discovery in the post genome
A data mining approach for location prediction in mobile environments
Data & Knowledge Engineering
Proceedings of the 2005 ACM SIGPLAN workshop on Haskell
Mining knowledge from text using information extraction
ACM SIGKDD Explorations Newsletter - Natural language processing and text mining
Practical methods for constructing suffix trees
The VLDB Journal — The International Journal on Very Large Data Bases
Tight approximability results for test set problems in bioinformatics
Journal of Computer and System Sciences
Transposition invariant string matching
Journal of Algorithms
Nonembeddability theorems via Fourier analysis
FOCS '05 Proceedings of the 46th Annual IEEE Symposium on Foundations of Computer Science
Exact match search in sequence data using suffix trees
Proceedings of the 14th ACM international conference on Information and knowledge management
ViPER: augmenting automatic information extraction with visual perceptions
Proceedings of the 14th ACM international conference on Information and knowledge management
Searching Genomes for Noncoding RNA Using FastR
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Accurate repeat finding and object skipping using fingerprints
Proceedings of the 13th annual ACM international conference on Multimedia
Descriptional complexity of error/edit systems
Journal of Automata, Languages and Combinatorics - Special issue: Selected papers of the fourth international workshop on descriptional complexity of formal systems
Adaptive Product Normalization: Using Online Learning for Record Linkage in Comparison Shopping
ICDM '05 Proceedings of the Fifth IEEE International Conference on Data Mining
Fast Frequent String Mining Using Suffix Arrays
ICDM '05 Proceedings of the Fifth IEEE International Conference on Data Mining
Sentence Fusion for Multidocument News Summarization
Computational Linguistics
Cache-oblivious string dictionaries
SODA '06 Proceedings of the seventeenth annual ACM-SIAM symposium on Discrete algorithm
Parallel Branch-and-Bound Algorithm for Constructing Evolutionary Trees from Distance Matrix
HPCASIA '05 Proceedings of the Eighth International Conference on High-Performance Computing in Asia-Pacific Region
Parallel Multiple Sequences Alignment in SMP Cluster
HPCASIA '05 Proceedings of the Eighth International Conference on High-Performance Computing in Asia-Pacific Region
Unsupervised induction of stochastic context-free grammars using distributional clustering
ConLL '01 Proceedings of the 2001 workshop on Computational Natural Language Learning - Volume 7
Bootstrapping lexical choice via multiple-sequence alignment
EMNLP '02 Proceedings of the ACL-02 conference on Empirical methods in natural language processing - Volume 10
Processing comparable corpora with Bilingual Suffix Trees
EMNLP '02 Proceedings of the ACL-02 conference on Empirical methods in natural language processing - Volume 10
Backward machine transliteration by learning phonetic similarity
COLING-02 proceedings of the 6th conference on Natural language learning - Volume 20
Named entity learning and verification: expectation maximization in large corpora
COLING-02 proceedings of the 6th conference on Natural language learning - Volume 20
A new method for approximate indexing and dictionarylookup with one error
Information Processing Letters
An efficient DNA sequence searching method using position specific weighting scheme
Journal of Information Science
A framework for representing navigational patterns as full temporal objects
ACM SIGecom Exchanges
LZ trie and dictionary compression
Software—Practice & Experience
Perturbing and evaluating numerical programs without recompilation: the wonglediff way
Software—Practice & Experience
Software—Practice & Experience
Understanding social welfare service patterns using sequential analysis
dg.o '04 Proceedings of the 2004 annual national conference on Digital government research
Pattern matching for arc-annotated sequences
ACM Transactions on Algorithms (TALG)
The greedy algorithm for edit distance with moves
Information Processing Letters
A language-theoretic approach to covering problems
Journal of Automata, Languages and Combinatorics
Sequential Pattern Mining in Multi-Databases via Multiple Alignment
Data Mining and Knowledge Discovery
Integrating XML data sources using approximate joins
ACM Transactions on Database Systems (TODS)
An Efficient Algorithm for the Identification of Structured Motifs in DNA Promoter Sequences
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Minimum-Flip Supertrees: Complexity and Algorithms
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Exact computation of protein structure similarity
Proceedings of the twenty-second annual symposium on Computational geometry
Construction of Aho Corasick automaton in linear time for integer alphabets
Information Processing Letters
Efficient discovery of loosely structured motifs in biological data
Proceedings of the 2006 ACM symposium on Applied computing
PackageBLAST: an adaptive multi-policy grid service for biological sequence comparison
Proceedings of the 2006 ACM symposium on Applied computing
Challenges in the compilation of a domain specific language for dynamic programming
Proceedings of the 2006 ACM symposium on Applied computing
Pattern Recognition Letters
Sequential and parallel algorithms for the NCA problem on pure pointer machines
Theoretical Computer Science
Approximate string matching using compressed suffix arrays
Theoretical Computer Science
A metric index for approximate string matching
Theoretical Computer Science
Fast and space efficient string kernels using suffix arrays
ICML '06 Proceedings of the 23rd international conference on Machine learning
A system for supporting evidence recording in bibliographic records: Research Articles
Journal of the American Society for Information Science and Technology
Parameter estimation under ambiguity and contamination with the spurious model
Journal of Multivariate Analysis
Extracting key-substring-group features for text classification
Proceedings of the 12th ACM SIGKDD international conference on Knowledge discovery and data mining
An efficient algorithm to detect palindromes in DNA sequences using periodicity transform
Signal Processing - Special section: Advances in signal processing-assisted cross-layer designs
Speeding up transposition-invariant string matching
Information Processing Letters
The Mercury system: exploiting truly fast hardware for data search
SNAPI '03 Proceedings of the international workshop on Storage network architecture and parallel I/Os
Reference-based indexing of sequence databases
VLDB '06 Proceedings of the 32nd international conference on Very large data bases
A suffix tree approach to anti-spam email filtering
Machine Learning
Fast search in DNA sequence databases using punctuation and indexing
ACST'06 Proceedings of the 2nd IASTED international conference on Advances in computer science and technology
Word assembly through minimal forbidden words
Theoretical Computer Science
Efficient sequence alignment of network traffic
Proceedings of the 6th ACM SIGCOMM conference on Internet measurement
Unsupervised analysis of activity sequences using event-motifs
Proceedings of the 4th ACM international workshop on Video surveillance and sensor networks
Table design in dynamic programming
Information and Computation
A complete mechanization of correctness of a string-preprocessing algorithm
Formal Methods in System Design
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
An efficient hybrid clustering algorithm for molecular sequences classification
Proceedings of the 44th annual Southeast regional conference
Scanning workstation memory for malicious codes using dedicated coprocessors
Proceedings of the 44th annual Southeast regional conference
Phoenix-based clone detection using suffix trees
Proceedings of the 44th annual Southeast regional conference
The string edit distance matching problem with moves
ACM Transactions on Algorithms (TALG)
A data structure for a sequence of string accesses in external memory
ACM Transactions on Algorithms (TALG)
Adapting Web information extraction knowledge via mining site-invariant and site-dependent features
ACM Transactions on Internet Technology (TOIT)
When indexing equals compression: Experiments with compressing suffix arrays and applications
ACM Transactions on Algorithms (TALG)
ACM Computing Surveys (CSUR)
Longest repeats with a block of k don't cares
Theoretical Computer Science
An efficient algorithm for online square detection
Theoretical Computer Science - Computing and combinatorics
Linear work suffix array construction
Journal of the ACM (JACM)
Automated known problem diagnosis with event traces
Proceedings of the 1st ACM SIGOPS/EuroSys European Conference on Computer Systems 2006
FASIL email summarisation system
COLING '04 Proceedings of the 20th international conference on Computational Linguistics
Efficient unsupervised recursive word segmentation using minimum description length
COLING '04 Proceedings of the 20th international conference on Computational Linguistics
Faster two-dimensional pattern matching with rotations
Theoretical Computer Science
Constructing large suffix trees on a computational grid
Journal of Parallel and Distributed Computing
Longest common subsequence problem for unoriented and cyclic strings
Theoretical Computer Science
An efficient alignment algorithm for masked sequences
Theoretical Computer Science
Computing suffix links for suffix trees and arrays
Information Processing Letters
Succinct data structures for flexible text retrieval systems
Journal of Discrete Algorithms
Motif discovery by monotone scores
Discrete Applied Mathematics
Efficient parameterized string matching
Information Processing Letters
All maximal-pairs in step-leap representation of melodic sequence
Information Sciences: an International Journal
Determining the consistency of partial tree descriptions
Artificial Intelligence
Families of FPGA-based accelerators for approximate string matching
Microprocessors & Microsystems
Dynamic programming algorithms for the mosaic longest common subsequence problem
Information Processing Letters
Accurate discovery of co-derivative documents via duplicate text detection
Information Systems
Frequent Subtree Mining - An Overview
Fundamenta Informaticae - Advances in Mining Graphs, Trees and Sequences
The phrase-based vector space model for automatic retrieval of free-text medical documents
Data & Knowledge Engineering
Marking musical dictations using the edit distance algorithm
Software—Practice & Experience
Quartet-Based Phylogeny Reconstruction with Answer Set Programming
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
DNA Sequencing by Hybridization via Genetic Search
Operations Research
Exploring many-to-one speech-to-text correlation for web-based language learning
ACM Transactions on Multimedia Computing, Communications, and Applications (TOMCCAP)
Mining minimal distinguishing subsequence patterns with gap constraints
Knowledge and Information Systems
AUTOMATIC DOMAIN ONTOLOGY GENERATION FROM WEB SITES
Journal of Integrated Design & Process Science
On the uniform edge-partition of a tree
Discrete Applied Mathematics
Algorithms for extracting motifs from biological weighted sequences
Journal of Discrete Algorithms
Linear time algorithm for the longest common repeat problem
Journal of Discrete Algorithms
Edit distance with move operations
Journal of Discrete Algorithms
Efficient implementation of Aho–Corasick pattern matching automata using Unicode
Software—Practice & Experience
On-line construction of compact directed acyclic word graphs
Discrete Applied Mathematics - 12th annual symposium on combinatorial pattern matching (CPM)
A New Flow Diagramming Scheme For Mapping And Analysis Of Multi-Product Flows In A Facility
Journal of Integrated Design & Process Science - Manufacturing And Design
Do not crawl in the dust: different urls with similar text
Proceedings of the 16th international conference on World Wide Web
Using Google distance to weight approximate ontology matches
Proceedings of the 16th international conference on World Wide Web
Multi-factor clustering for a marketplace search interface
Proceedings of the 16th international conference on World Wide Web
BWT-based efficient shape matching
Proceedings of the 2007 ACM symposium on Applied computing
Dynamic Programming Based Approximation Algorithms for Sequence Alignment with Constraints
INFORMS Journal on Computing
The Fine Structure of Galls in Phylogenetic Networks
INFORMS Journal on Computing
Benchmarking declarative approximate selection predicates
Proceedings of the 2007 ACM SIGMOD international conference on Management of data
Integration of Ontology Data through Learning Instance Matching
WI '06 Proceedings of the 2006 IEEE/WIC/ACM International Conference on Web Intelligence
Near optimal multiple alignment within a band in polynomial time
Journal of Computer and System Sciences
Increasing Population Diversity Through Cultural Learning
Adaptive Behavior - Animals, Animats, Software Agents, Robots, Adaptive Systems
On string classification in data streams
Proceedings of the 13th ACM SIGKDD international conference on Knowledge discovery and data mining
Model-directed Web transactions under constrained modalities
ACM Transactions on the Web (TWEB)
On the range maximum-sum segment query problem
Discrete Applied Mathematics
Search the audio, browse the video: a generic paradigm for video collections
EURASIP Journal on Applied Signal Processing
Estimating the sortedness of a data stream
SODA '07 Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete algorithms
Ultra-succinct representation of ordered trees
SODA '07 Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete algorithms
A Study of Architectural Optimization Methods in Bioinformatics Applications
International Journal of High Performance Computing Applications
Indexing schemes for similarity search in datasets of short protein fragments
Information Systems
Biologically inspired Lexicon Structuring Technique
HLT '02 Proceedings of the second international conference on Human Language Technology Research
Effective retrieval of polyphonic audio with polyphonic symbolic queries
Proceedings of the international workshop on Workshop on multimedia information retrieval
Music similarity: improvements of edit-based algorithms by considering music theory
Proceedings of the international workshop on Workshop on multimedia information retrieval
Theoretical Computer Science
Partial fillup and search time in LC tries
ACM Transactions on Algorithms (TALG)
Unsupervised pattern mining from symbolic temporal data
ACM SIGKDD Explorations Newsletter - Special issue on data mining for health informatics
Edit distance for a run-length-encoded string and an uncompressed string
Information Processing Letters
Journal of Discrete Algorithms
Theoretical Computer Science
Single pass streaming BLAST on FPGAs
Parallel Computing
Assembling genomes on large-scale parallel computers
Journal of Parallel and Distributed Computing
Practical suffix tree construction
VLDB '04 Proceedings of the Thirtieth international conference on Very large data bases - Volume 30
Algorithms for Efficient Near-Perfect Phylogenetic Tree Reconstruction in Theory and Practice
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Dynamic spatial approximation trees
Journal of Experimental Algorithmics (JEA)
Distance measures for biological sequences: Some recent approaches
International Journal of Approximate Reasoning
PSIST: A scalable approach to indexing protein structures using suffix trees
Journal of Parallel and Distributed Computing
Extending q-grams to estimate selectivity of string matching with low edit distance
VLDB '07 Proceedings of the 33rd international conference on Very large data bases
Approximate distance oracles for geometric spanners
ACM Transactions on Algorithms (TALG)
Efficient algorithms for finding interleaving relationship between sequences
Information Processing Letters
Computational Problems in Perfect Phylogeny Haplotyping: Typing without Calling the Allele
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
True suffix tree approach for discovering non-trivial repeating patterns in a music object
Multimedia Tools and Applications
Computer Music Journal
A parallel strategy for biological sequence alignment in restricted memory space
Journal of Parallel and Distributed Computing
An all-substrings common subsequence algorithm
Discrete Applied Mathematics
Comparing bacterial genomes from linear orders of patterns
Discrete Applied Mathematics
The SBC-tree: an index for run-length compressed sequences
EDBT '08 Proceedings of the 11th international conference on Extending database technology: Advances in database technology
Finding the population variance of costs over the solution space of the TSP in polynomial time
MATH'07 Proceedings of the 11th WSEAS International Conference on Applied Mathematics
International Journal of Bioinformatics Research and Applications
Periodicity and repetitions in parameterized strings
Discrete Applied Mathematics
Information Processing Letters
DMTracker: finding bugs in large-scale parallel programs by detecting anomaly in data movements
Proceedings of the 2007 ACM/IEEE conference on Supercomputing
Optimised coupling of hierarchies in image registration
Image and Vision Computing
Converting suffix trees into factor/suffix oracles
Journal of Discrete Algorithms
Data & Knowledge Engineering
Hierarchical Hidden Markov Models for User/Process Profile Learning
Fundamenta Informaticae - Special issue ISMIS'05
A graph approach to the threshold all-against-all substring matching problem
Journal of Experimental Algorithmics (JEA)
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
On the Approximation of Correlation Clustering and Consensus Clustering
Journal of Computer and System Sciences
A compressed self-index using a Ziv---Lempel dictionary
Information Retrieval
Improving suffix array locality for fast pattern matching on disk
Proceedings of the 2008 ACM SIGMOD international conference on Management of data
Finding the longest common subsequence for multiple biological sequences by ant colony optimization
Computers and Operations Research
Algorithms for computing variants of the longest common subsequence problem
Theoretical Computer Science
Computing similarity of run-length encoded strings with affine gap penalty
Theoretical Computer Science
Fast profile matching algorithms – A survey
Theoretical Computer Science
Reference-based indexing for metric spaces with costly distance measures
The VLDB Journal — The International Journal on Very Large Data Bases
Linear-Time Computation of Similarity Measures for Sequential Data
The Journal of Machine Learning Research
Algorithms and data structures for external memory
Foundations and Trends® in Theoretical Computer Science
A space efficient solution to the frequent string mining problem for many databases
Data Mining and Knowledge Discovery
External Memory Algorithms for String Problems
Fundamenta Informaticae - Workshop on Combinatorial Algorithms
The pervasive applications of computer science in biomedicine
Journal of Computing Sciences in Colleges
Analysis of a modification of Gusfield's recursive algorithm for reconstructing ultrametric trees
Information Processing Letters
Optimal prefix and suffix queries on texts
Information Processing Letters
SOFSEM '07 Proceedings of the 33rd conference on Current Trends in Theory and Practice of Computer Science
Searching for Gapped Palindromes
CPM '08 Proceedings of the 19th annual symposium on Combinatorial Pattern Matching
An(other) Entropy-Bounded Compressed Suffix Tree
CPM '08 Proceedings of the 19th annual symposium on Combinatorial Pattern Matching
Dynamic Fully-Compressed Suffix Trees
CPM '08 Proceedings of the 19th annual symposium on Combinatorial Pattern Matching
Using Similarity Metrics for Matching Lifelong Learners
ITS '08 Proceedings of the 9th international conference on Intelligent Tutoring Systems
COCOON '08 Proceedings of the 14th annual international conference on Computing and Combinatorics
Efficient Algorithms for SNP Haplotype Block Selection Problems
COCOON '08 Proceedings of the 14th annual international conference on Computing and Combinatorics
Sequence Alignment Algorithms for Run-Length-Encoded Strings
COCOON '08 Proceedings of the 14th annual international conference on Computing and Combinatorics
Extending the Four Russian Algorithm to Compute the Edit Script in Linear Space
ICCS '08 Proceedings of the 8th international conference on Computational Science, Part I
Using MPI Communication Patterns to Guide Source Code Transformations
ICCS '08 Proceedings of the 8th international conference on Computational Science, Part III
ICIC '08 Proceedings of the 4th international conference on Intelligent Computing: Advanced Intelligent Computing Theories and Applications - with Aspects of Artificial Intelligence
A Drum Machine That Learns to Groove
KI '08 Proceedings of the 31st annual German conference on Advances in Artificial Intelligence
Summarizing Multiple Gene Trees Using Cluster Networks
WABI '08 Proceedings of the 8th international workshop on Algorithms in Bioinformatics
Balance Properties and Distribution of Squares in Circular Words
DLT '08 Proceedings of the 12th international conference on Developments in Language Theory
An Alignment-Free Distance Measure for Closely Related Genomes
RECOMB-CG '08 Proceedings of the international workshop on Comparative Genomics
A Multi-measure Nearest Neighbor Algorithm for Time Series Classification
IBERAMIA '08 Proceedings of the 11th Ibero-American conference on AI: Advances in Artificial Intelligence
On the minimum common integer partition problem
ACM Transactions on Algorithms (TALG)
Learning Balls of Strings from Edit Corrections
The Journal of Machine Learning Research
Efficient on-line repetition detection
Theoretical Computer Science
On-line construction of compact suffix vectors and maximal repeats
Theoretical Computer Science
Ed-Join: an efficient algorithm for similarity joins with edit distance constraints
Proceedings of the VLDB Endowment
Redundancy elimination revisited
Proceedings of the 17th international conference on Parallel architectures and compilation techniques
Characterization of the evolution of a news Web site
Journal of Systems and Software
Compressed text indexes: From theory to practice
Journal of Experimental Algorithmics (JEA)
A data mining approach for analysis of worm activity through automatic signature generation
Proceedings of the 1st ACM workshop on Workshop on AISec
Semi-local longest common subsequences in subquadratic time
Journal of Discrete Algorithms
Temporal similarity by measuring possibilistic uncertainty in CBR
Fuzzy Sets and Systems
A new method for indexing genomes using on-disk suffix trees
Proceedings of the 17th ACM conference on Information and knowledge management
Gestures are strings: efficient online gesture spotting and classification using string matching
Proceedings of the ICST 2nd international conference on Body area networks
Do not crawl in the DUST: Different URLs with similar text
ACM Transactions on the Web (TWEB)
g-MARS: Protein Classification Using Gapped Markov Chains and Support Vector Machines
PRIB '08 Proceedings of the Third IAPR International Conference on Pattern Recognition in Bioinformatics
Algorithms for subsequence combinatorics
Theoretical Computer Science
Fast and compact regular expression matching
Theoretical Computer Science
Quasi-median hulls in Hamming space are Steiner hulls
Discrete Applied Mathematics
On the tiling by translation problem
Discrete Applied Mathematics
"Cloning considered harmful" considered harmful: patterns of cloning in software
Empirical Software Engineering
Alignment of biological sequences with quality scores
International Journal of Bioinformatics Research and Applications
Indexed Hierarchical Approximate String Matching
SPIRE '08 Proceedings of the 15th International Symposium on String Processing and Information Retrieval
Run-Length Compressed Indexes Are Superior for Highly Repetitive Sequence Collections
SPIRE '08 Proceedings of the 15th International Symposium on String Processing and Information Retrieval
Interchange Rearrangement: The Element-Cost Model
SPIRE '08 Proceedings of the 15th International Symposium on String Processing and Information Retrieval
Learning Scoring Schemes for Sequence Alignment from Partial Examples
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Cell probe lower bounds for succinct data structures
SODA '09 Proceedings of the twentieth Annual ACM-SIAM Symposium on Discrete Algorithms
An ontology data matching method for web information integration
Proceedings of the 10th International Conference on Information Integration and Web-based Applications & Services
Data Compression for Proof Replay
Journal of Automated Reasoning
Faster pattern matching with character classes using prime number encoding
Journal of Computer and System Sciences
Note: k-difference matching in amortized linear time for all the words in a text
Theoretical Computer Science
Detection of cloaked web spam by using tag-based methods
Expert Systems with Applications: An International Journal
Algorithms for clustering clickstream data
Information Processing Letters
Efficient data structures for range-aggregate queries on trees
Proceedings of the 12th International Conference on Database Theory
Approximate substring selectivity estimation
Proceedings of the 12th International Conference on Extending Database Technology: Advances in Database Technology
Information Processing Letters
Approximation algorithms for constrained generalized tree alignment problem
Discrete Applied Mathematics
An algorithm for solving the longest increasing circular subsequence problem
Information Processing Letters
On the Construction of an Antidictionary with Linear Complexity Using the Suffix Tree
IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences
Exploiting web search engines to search structured databases
Proceedings of the 18th international conference on World wide web
Shallow semantic labeling using two-phase feature-enhanced string matching
Expert Systems with Applications: An International Journal
A new protein motif extraction framework based on constrained co-clustering
Proceedings of the 2009 ACM symposium on Applied Computing
Discovering subword associations in strings in time linear in the output size
Journal of Discrete Algorithms
Reducing Space Requirements for Disk Resident Suffix Arrays
DASFAA '09 Proceedings of the 14th International Conference on Database Systems for Advanced Applications
Approximating edit distance in near-linear time
Proceedings of the forty-first annual ACM symposium on Theory of computing
Phylogenetic graph models beyond trees
Discrete Applied Mathematics
Multiple Sequence Alignment System for Pyrosequencing Reads
BICoB '09 Proceedings of the 1st International Conference on Bioinformatics and Computational Biology
Communication-Efficient Private Protocols for Longest Common Subsequence
CT-RSA '09 Proceedings of the The Cryptographers' Track at the RSA Conference 2009 on Topics in Cryptology
Compiler Optimization Pass Visualization: The Procedural Abstraction Case
ACM Transactions on Computing Education (TOCE) - Special Issue on the 5th Program Visualization Workshop (PVW’08)
ODE: Ontology-assisted data extraction
ACM Transactions on Database Systems (TODS)
Solving necklace constraint problems
Journal of Algorithms
Comparing text entry methods for interactive television applications
Proceedings of the seventh european conference on European interactive television conference
A simple attack on some clock-controlled generators
Computers & Mathematics with Applications
Procedural Abstraction with Reverse Prefix Trees
Proceedings of the 7th annual IEEE/ACM International Symposium on Code Generation and Optimization
Beam search for the longest common subsequence problem
Computers and Operations Research
Pairwise sequence alignment algorithms: a survey
Proceedings of the 2009 conference on Information Science, Technology and Applications
Efficient discovery of unusual patterns in time series
New Generation Computing
Improvement of performance of MegaBlast algorithm for DNA sequence alignment
Journal of Computer Science and Technology
An alignment based system for chord sequence retrieval
Proceedings of the 9th ACM/IEEE-CS joint conference on Digital libraries
Catching the drift: learning broad matches from clickthrough data
Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining
OLAP on search logs: an infrastructure supporting data-driven applications in search engines
Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining
Serial and parallel methods for i/o efficient suffix tree construction
Proceedings of the 2009 ACM SIGMOD International Conference on Management of data
TAMC '09 Proceedings of the 6th Annual Conference on Theory and Applications of Models of Computation
Storage and Retrieval of Individual Genomes
RECOMB 2'09 Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology
Learning Models for Aligning Protein Sequences with Predicted Secondary Structure
RECOMB 2'09 Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology
The status of the P versus NP problem
Communications of the ACM - The Status of the P versus NP Problem
Phonetic Spelling and Heuristic Search
Proceedings of the 2006 conference on ECAI 2006: 17th European Conference on Artificial Intelligence August 29 -- September 1, 2006, Riva del Garda, Italy
Proceedings of the 2008 conference on ECAI 2008: 18th European Conference on Artificial Intelligence
Solving Necklace Constraint Problems
Proceedings of the 2008 conference on ECAI 2008: 18th European Conference on Artificial Intelligence
Efficient construction of maximal and minimal representations of motifs of a string
Theoretical Computer Science
LCS Approximation via Embedding into Local Non-repetitive Strings
CPM '09 Proceedings of the 20th Annual Symposium on Combinatorial Pattern Matching
Fast Searching in Packed Strings
CPM '09 Proceedings of the 20th Annual Symposium on Combinatorial Pattern Matching
Permuted Longest-Common-Prefix Array
CPM '09 Proceedings of the 20th Annual Symposium on Combinatorial Pattern Matching
On the Structure of Consistent Partitions of Substring Set of a Word
FAW '09 Proceedings of the 3d International Workshop on Frontiers in Algorithmics
Cross Language Information Extraction Knowledge Adaptation
RSKT '09 Proceedings of the 4th International Conference on Rough Sets and Knowledge Technology
A novel sequence representation for unsupervised analysis of human activities
Artificial Intelligence
Transformation of Suffix Arrays into Suffix Trees on the MPI Environment
RSFDGrC '07 Proceedings of the 11th International Conference on Rough Sets, Fuzzy Sets, Data Mining and Granular Computing
A Unified Approach for Reconstructing Ancient Gene Clusters
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Evolutionary selection of features for neural sleep/wake discrimination
Journal of Artificial Evolution and Applications - Special issue on artificial evolution methods in the biological and biomedical sciences
Engineering a compressed suffix tree implementation
Journal of Experimental Algorithmics (JEA)
A fast algorithm for finding the positions of all squares in a run-length encoded string
Theoretical Computer Science
Computational geometric aspects of rhythm, melody, and voice-leading
Computational Geometry: Theory and Applications
Randomized shortest-path problems: Two related models
Neural Computation
Learnable similarity functions and their applications to clustering and record linkage
AAAI'04 Proceedings of the 19th national conference on Artifical intelligence
Finding the longest common nonsuperstring in linear time
Information Processing Letters
Induction of cross-language affix and letter sequence correspondence
CrossLangInduction '06 Proceedings of the International Workshop on Cross-Language Knowledge Induction
Note: Lower bounds for optimal alignments of binary sequences
Discrete Applied Mathematics
Transforming MPI source code based on communication patterns
Future Generation Computer Systems
A Groovy Virtual Drumming Agent
IVA '09 Proceedings of the 9th International Conference on Intelligent Virtual Agents
Proportional fault-tolerant data mining with applications to bioinformatics
Information Systems Frontiers
Interchange rearrangement: The element-cost model
Theoretical Computer Science
Maximal and minimal representations of gapped and non-gapped motifs of a string
Theoretical Computer Science
Suffix tree characterization of maximal motifs in biological sequences
Theoretical Computer Science
Optimizing data intensive GPGPU computations for DNA sequence alignment
Parallel Computing
A Compressed Enhanced Suffix Array Supporting Fast String Matching
SPIRE '09 Proceedings of the 16th International Symposium on String Processing and Information Retrieval
Consensus Optimizing Both Distance Sum and Radius
SPIRE '09 Proceedings of the 16th International Symposium on String Processing and Information Retrieval
SPIRE '09 Proceedings of the 16th International Symposium on String Processing and Information Retrieval
Practical Algorithms for the Longest Common Extension Problem
SPIRE '09 Proceedings of the 16th International Symposium on String Processing and Information Retrieval
Abstractions in Process Mining: A Taxonomy of Patterns
BPM '09 Proceedings of the 7th International Conference on Business Process Management
Mining Peculiar Compositions of Frequent Substrings from Sparse Text Data Using Background Texts
ECML PKDD '09 Proceedings of the European Conference on Machine Learning and Knowledge Discovery in Databases: Part I
From Nerode's congruence to suffix automata with mismatches
Theoretical Computer Science
General suffix automaton construction algorithm and space bounds
Theoretical Computer Science
AAAI'07 Proceedings of the 22nd national conference on Artificial intelligence - Volume 1
Journal of Artificial Intelligence Research
A comprehensive trainable error model for sung music queries
Journal of Artificial Intelligence Research
The ultrametric constraint and its application to phylogenetics
Journal of Artificial Intelligence Research
Incremental construction of structured hidden Markov models
IJCAI'07 Proceedings of the 20th international joint conference on Artifical intelligence
Computing and historical phonology
SigMorPhon '07 Proceedings of Ninth Meeting of the ACL Special Interest Group in Computational Morphology and Phonology
Efficient parallel branch-and-bound algorithm for constructing minimum ultrametric trees
Journal of Parallel and Distributed Computing
Phon 1.2: a computational basis for phonological database elaboration and model testing
CACLA '07 Proceedings of the Workshop on Cognitive Aspects of Computational Language Acquisition
Generating an entailment corpus from news headlines
EMSEE '05 Proceedings of the ACL Workshop on Empirical Modeling of Semantic Equivalence and Entailment
Faster entropy-bounded compressed suffix trees
Theoretical Computer Science
Searching for gapped palindromes
Theoretical Computer Science
Enhanced Gestalt Theory Guided Web Page Segmentation for Mobile Browsing
WI-IAT '09 Proceedings of the 2009 IEEE/WIC/ACM International Joint Conference on Web Intelligence and Intelligent Agent Technology - Volume 03
Kernel Methods in Computer Vision
Foundations and Trends® in Computer Graphics and Vision
Adaptation of the F-measure to cluster based lexicon quality evaluation
Evalinitiatives '03 Proceedings of the EACL 2003 Workshop on Evaluation Initiatives in Natural Language Processing: are evaluation methods, metrics and resources reusable?
Multiple sequence alignments in linguistics
LaTeCH-SHELT&R '09 Proceedings of the EACL 2009 Workshop on Language Technology and Resources for Cultural Heritage, Social Sciences, Humanities, and Education
An optimal decomposition algorithm for tree edit distance
ACM Transactions on Algorithms (TALG)
Creating probabilistic databases from duplicated data
The VLDB Journal — The International Journal on Very Large Data Bases
Comparative experiments on learning information extractors for proteins and their interactions
Artificial Intelligence in Medicine
VOGUE: A variable order hidden Markov model with duration based on frequent sequence mining
ACM Transactions on Knowledge Discovery from Data (TKDD)
Computational Biology and Chemistry
AS-index: a structure for string search using n-grams and algebraic signatures
Proceedings of the 18th ACM conference on Information and knowledge management
Suffix trees for very large genomic sequences
Proceedings of the 18th ACM conference on Information and knowledge management
Incremental similarity joins with edit distance constraints
Proceedings of the 18th ACM conference on Information and knowledge management
URL normalization for de-duplication of web pages
Proceedings of the 18th ACM conference on Information and knowledge management
Highly scalable genome assembly on campus grids
Proceedings of the 2nd Workshop on Many-Task Computing on Grids and Supercomputers
Indexing genomic sequences on the IBM Blue Gene
Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis
Prism: An effective approach for frequent sequence mining via prime-block encoding
Journal of Computer and System Sciences
IEEE Transactions on Systems, Man, and Cybernetics, Part C: Applications and Reviews
Identification of design motifs with pattern matching algorithms
Information and Software Technology
DELPHI: a pattern-based method for detecting sequence similarity
IBM Journal of Research and Development
Expert Systems with Applications: An International Journal
Information Processing Letters
Heuristic Reusable Dynamic Programming: Efficient Updates of Local Sequence Alignment
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Information extraction for search engines using fast heuristic techniques
Data & Knowledge Engineering
Efficient pattern detection in extremely resource-constrained devices
SECON'09 Proceedings of the 6th Annual IEEE communications society conference on Sensor, Mesh and Ad Hoc Communications and Networks
Answering table augmentation queries from unstructured lists on the web
Proceedings of the VLDB Endowment
DNA error correcting codes: no crossover
CIBCB'09 Proceedings of the 6th Annual IEEE conference on Computational Intelligence in Bioinformatics and Computational Biology
Pattern matching with wildcards based on key character location
IRI'09 Proceedings of the 10th IEEE international conference on Information Reuse & Integration
Ranking search results for translated content
IRI'09 Proceedings of the 10th IEEE international conference on Information Reuse & Integration
FastWrap: an efficient wrapper for tabular data extraction from the web
IRI'09 Proceedings of the 10th IEEE international conference on Information Reuse & Integration
ACL '09 Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP: Volume 2 - Volume 2
Coordinate structure analysis with global structural constraints and alignment-based local features
ACL '09 Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP: Volume 2 - Volume 2
Bengali verb subcategorization frame acquisition: a baseline model
ALR7 Proceedings of the 7th Workshop on Asian Language Resources
Searching for "People Like Me" in a Lifelong Learning System
EC-TEL '09 Proceedings of the 4th European Conference on Technology Enhanced Learning: Learning in the Synergy of Multiple Disciplines
Contrasting Sequence Groups by Emerging Sequences
DS '09 Proceedings of the 12th International Conference on Discovery Science
An Automaton for Motifs Recognition in DNA Sequences
MICAI '09 Proceedings of the 8th Mexican International Conference on Artificial Intelligence
Actively Learning Ontology Matching via User Interaction
ISWC '09 Proceedings of the 8th International Semantic Web Conference
Finding All Approximate Gapped Palindromes
ISAAC '09 Proceedings of the 20th International Symposium on Algorithms and Computation
Improved Algorithms for Finding Consistent Superstrings Based on a New Graph Model
ISAAC '09 Proceedings of the 20th International Symposium on Algorithms and Computation
BPBM: An Algorithm for String Matching with Wildcards and Length Constraints
RSFDGrC '09 Proceedings of the 12th International Conference on Rough Sets, Fuzzy Sets, Data Mining and Granular Computing
Construction of component tapes for radial placement machines
Computers and Operations Research
A subsequence-histogram method for generic vocabulary recognition over deletion channels
ISIT'09 Proceedings of the 2009 IEEE international conference on Symposium on Information Theory - Volume 4
On-line construction of compact directed acyclic word graphs
Discrete Applied Mathematics
Geometric suffix tree: Indexing protein 3-D structures
Journal of the ACM (JACM)
A new method for approximate indexing and dictionary lookup with one error
Information Processing Letters
Scaled and permuted string matching
Information Processing Letters
The greedy algorithm for edit distance with moves
Information Processing Letters
Construction of Aho Corasick automaton in linear time for integer alphabets
Information Processing Letters
Transposition invariant string matching
Journal of Algorithms
An incremental clustering scheme for data de-duplication
Data Mining and Knowledge Discovery
Learning URL patterns for webpage de-duplication
Proceedings of the third ACM international conference on Web search and data mining
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Lowering the barriers to website testing with CoTester
Proceedings of the 15th international conference on Intelligent user interfaces
Scalable parallel word search in multicore/multiprocessor systems
The Journal of Supercomputing
Real-time shape retrieval for robotics using skip Tri-grams
IROS'09 Proceedings of the 2009 IEEE/RSJ international conference on Intelligent robots and systems
Ads-portal domains: Identification and measurements
ACM Transactions on the Web (TWEB)
Faster Algorithms for Computing Maximal Multirepeats in Multiple Sequences
Fundamenta Informaticae - Special Issue on Stringology
Toward a General Framework for Polyphonic Comparison
Fundamenta Informaticae - Special Issue on Stringology
Suffix tree construction algorithms on modern hardware
Proceedings of the 13th International Conference on Extending Database Technology
Efficient algorithms for the block edit problems
Information and Computation
A web page usage prediction scheme using sequence indexing and clustering techniques
Data & Knowledge Engineering
Algorithms for memory hierarchies: advanced lectures
Algorithms for memory hierarchies: advanced lectures
Communication-Efficient Privacy-Preserving Clustering
Transactions on Data Privacy
Finite automata based algorithms on subsequences and supersequences of degenerate strings
Journal of Discrete Algorithms
On the complexity of finding gapped motifs
Journal of Discrete Algorithms
Dynamic extended suffix arrays
Journal of Discrete Algorithms
Information Processing Letters
Acceleration of the Smith-Waterman algorithm using single and multiple graphics processors
Journal of Computational Physics
The Journal of Machine Learning Research
Edit-distance of weighted automata
CIAA'02 Proceedings of the 7th international conference on Implementation and application of automata
On the implementation of compact DAWG's
CIAA'02 Proceedings of the 7th international conference on Implementation and application of automata
Two-dimensional pattern matching with rotations
CPM'03 Proceedings of the 14th annual conference on Combinatorial pattern matching
Distributed and paged suffix trees for large genetic databases
CPM'03 Proceedings of the 14th annual conference on Combinatorial pattern matching
Space efficient linear time construction of suffix arrays
CPM'03 Proceedings of the 14th annual conference on Combinatorial pattern matching
Sparse LCS common substring alignment
CPM'03 Proceedings of the 14th annual conference on Combinatorial pattern matching
Pattern discovery in RNA secondary structure using affix trees
CPM'03 Proceedings of the 14th annual conference on Combinatorial pattern matching
Complexities of the centre and median string problems
CPM'03 Proceedings of the 14th annual conference on Combinatorial pattern matching
A fully linear-time approximation algorithm for grammar-based compression
CPM'03 Proceedings of the 14th annual conference on Combinatorial pattern matching
Evolving consensus sequence for multiple sequence alignment with a genetic algorithm
GECCO'03 Proceedings of the 2003 international conference on Genetic and evolutionary computation: PartII
Empirical exploration of perfect phylogeny haplotyping and haplotypers
COCOON'03 Proceedings of the 9th annual international conference on Computing and combinatorics
A space efficient algorithm for sequence alignment with inversions
COCOON'03 Proceedings of the 9th annual international conference on Computing and combinatorics
On all-substrings alignment problems
COCOON'03 Proceedings of the 9th annual international conference on Computing and combinatorics
Fast construction of generalized suffix trees over a very large alphabet
COCOON'03 Proceedings of the 9th annual international conference on Computing and combinatorics
Indexing structures for approximate string matching
CIAC'03 Proceedings of the 5th Italian conference on Algorithms and complexity
Covering problems from a formal language point of view
DLT'03 Proceedings of the 7th international conference on Developments in language theory
Simple linear work suffix array construction
ICALP'03 Proceedings of the 30th international conference on Automata, languages and programming
The efficient computation of complete and concise substring scales with suffix trees
ICFCA'07 Proceedings of the 5th international conference on Formal concept analysis
Space and time efficient algorithms to discover endogenous RNAi patterns in complete genome data
ISBRA'07 Proceedings of the 3rd international conference on Bioinformatics research and applications
Comparative analysis of gene-coexpression networks across species
ISBRA'07 Proceedings of the 3rd international conference on Bioinformatics research and applications
Ternary directed acyclic word graphs
CIAA'03 Proceedings of the 8th international conference on Implementation and application of automata
VECPAR'06 Proceedings of the 7th international conference on High performance computing for computational science
Efficient and scalable indexing techniques for biological sequence data
BIRD'07 Proceedings of the 1st international conference on Bioinformatics research and development
Maximum homologous crossover for linear genetic programming
EuroGP'03 Proceedings of the 6th European conference on Genetic programming
Search data structures for skewed strings
WEA'03 Proceedings of the 2nd international conference on Experimental and efficient algorithms
A practical method for approximate subsequence search in DNA databases
PAKDD'07 Proceedings of the 11th Pacific-Asia conference on Advances in knowledge discovery and data mining
Finding paths with the right cost
STACS'99 Proceedings of the 16th annual conference on Theoretical aspects of computer science
Content-dependent chunking for differential compression, the local maximum approach
Journal of Computer and System Sciences
Engineering a compressed suffix tree implementation
WEA'07 Proceedings of the 6th international conference on Experimental algorithms
Manifestation and exploitation of invariants in bioinformatics
AB'07 Proceedings of the 2nd international conference on Algebraic biology
Generation and matching of ontology data for the semantic web in a peer-to-peer framework
APWeb/WAIM'07 Proceedings of the joint 9th Asia-Pacific web and 8th international conference on web-age information management conference on Advances in data and web management
Exhaustive peptide searching using relations
BNCOD'07 Proceedings of the 24th British national conference on Databases
Local context selection for aligning sentences in parallel corpora
CONTEXT'07 Proceedings of the 6th international and interdisciplinary conference on Modeling and using context
Probabilistic beam search for the longest common subsequence problem
SLS'07 Proceedings of the 2007 international conference on Engineering stochastic local search algorithms: designing, implementing and analyzing effective heuristics
Controlling gaze with an embodied interactive control architecture
Applied Intelligence
Botzilla: detecting the "phoning home" of malicious software
Proceedings of the 2010 ACM Symposium on Applied Computing
On the suffix automaton with mismatches
CIAA'07 Proceedings of the 12th international conference on Implementation and application of automata
Factor automata of automata and applications
CIAA'07 Proceedings of the 12th international conference on Implementation and application of automata
Comparison of simple encoding schemes in GA's for the motif finding problem: preliminary results
BSB'07 Proceedings of the 2nd Brazilian conference on Advances in bioinformatics and computational biology
HM'07 Proceedings of the 4th international conference on Hybrid metaheuristics
Extraction of user-defined data blocks using the regularity of dynamic web pages
ICIC'07 Proceedings of the intelligent computing 3rd international conference on Advanced intelligent computing theories and applications
Adapting machine learning technique for periodicity detection in nucleosomal locations in sequences
IDEAL'07 Proceedings of the 8th international conference on Intelligent data engineering and automated learning
Local transpositions in alignment of polyphonic musical sequences
SPIRE'07 Proceedings of the 14th international conference on String processing and information retrieval
A web-page usage prediction scheme using weighted suffix trees
SPIRE'07 Proceedings of the 14th international conference on String processing and information retrieval
Prefix-shuffled geometric suffix tree
SPIRE'07 Proceedings of the 14th international conference on String processing and information retrieval
An experimental study of compressed indexing and local alignments of DNA
COCOA'07 Proceedings of the 1st international conference on Combinatorial optimization and applications
A lagrangian relaxation approach for the multiple sequence alignment problem
COCOA'07 Proceedings of the 1st international conference on Combinatorial optimization and applications
Structural and semantic similarity metrics for web service matchmaking
EC-Web'07 Proceedings of the 8th international conference on E-commerce and web technologies
Data analysis and bioinformatics
PReMI'07 Proceedings of the 2nd international conference on Pattern recognition and machine intelligence
Space efficient indexes for string matching with don't cares
ISAAC'07 Proceedings of the 18th international conference on Algorithms and computation
An FPGA-based accelerator for multiple biological sequence alignment with DIALIGN
HiPC'07 Proceedings of the 14th international conference on High performance computing
Incorporating concept hierarchies into usage mining based recommendations
WebKDD'06 Proceedings of the 8th Knowledge discovery on the web international conference on Advances in web mining and web usage analysis
Learning actions using robust string kernels
Proceedings of the 2nd conference on Human motion: understanding, modeling, capture and animation
Context-based sentence alignment in parallel corpora
CICLing'08 Proceedings of the 9th international conference on Computational linguistics and intelligent text processing
WALCOM'08 Proceedings of the 2nd international conference on Algorithms and computation
Reassortment Networks for Investigating the Evolution of Segmented Viruses
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Efficient algorithms for model-based motif discovery from multiple sequences
TAMC'08 Proceedings of the 5th international conference on Theory and applications of models of computation
LATIN'08 Proceedings of the 8th Latin American conference on Theoretical informatics
LATIN'08 Proceedings of the 8th Latin American conference on Theoretical informatics
Brief communication: An efficient similarity search based on indexing in large DNA databases
Computational Biology and Chemistry
Towards behavioral reflexion models
ISSRE'09 Proceedings of the 20th IEEE international conference on software reliability engineering
Expressive languages for path queries over graph-structured data
Proceedings of the twenty-ninth ACM SIGMOD-SIGACT-SIGART symposium on Principles of database systems
Schema clustering and retrieval for multi-domain pay-as-you-go data integration systems
Proceedings of the 2010 ACM SIGMOD International Conference on Management of data
Machine learning for intelligent bioinformatics: part 1 machine learning integration
AIKED'10 Proceedings of the 9th WSEAS international conference on Artificial intelligence, knowledge engineering and data bases
Machine learning for intelligent bioinformatics: part 2 intelligent control integration
AIKED'10 Proceedings of the 9th WSEAS international conference on Artificial intelligence, knowledge engineering and data bases
Comparing trees via crossing minimization
Journal of Computer and System Sciences
A faster algorithm for the computation of string convolutions using LZ78 parsing
Information Processing Letters
New algorithms for efficient parallel string comparison
Proceedings of the twenty-second annual ACM symposium on Parallelism in algorithms and architectures
Parallelisation of sequence comparison algorithms using hybridised parallel techniques
HONET'09 Proceedings of the 6th international conference on High capacity optical networks and enabling technologies
A general framework for local pairwise alignment statistics with gaps
WABI'09 Proceedings of the 9th international conference on Algorithms in bioinformatics
Computing longest common substrings via suffix arrays
CSR'08 Proceedings of the 3rd international conference on Computer science: theory and applications
String distances and uniformities
ICANNGA'09 Proceedings of the 9th international conference on Adaptive and natural computing algorithms
Approximate variable-length time series motif discovery using grammar inference
Proceedings of the Tenth International Workshop on Multimedia Data Mining
Semi-automatic task recognition for interactive narratives with EAT & RUN
Proceedings of the Intelligent Narrative Technologies III Workshop
Optimal global alignment of signals by maximization of Pearson correlation
Information Processing Letters
Natural Computing: an international journal
Intelligent answering location questions from the web using molecular alignment
Journal of Intelligent Information Systems
Bit-Parallel Algorithm for the Constrained Longest Common Subsequence Problem
Fundamenta Informaticae
Computational Biology and Chemistry
Fast computation of a longest increasing subsequence and application
Information and Computation
Classifying proteins using gapped Markov feature pairs
Neurocomputing
Counting distinct palindromes in a word in linear time
Information Processing Letters
Solving longest common subsequence and related problems on graphical processing units
Software—Practice & Experience
Accelerating Scalar-Product Based Sequence Alignment using Graphics Processor Units
Journal of Signal Processing Systems
Cache-Oblivious Dynamic Programming for Bioinformatics
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Integrating machine learning in intelligent bioinformatics
WSEAS Transactions on Computers
Ring optimization of edit metric codes in DNA
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology
The solution space of genome sequence alignment and LIS graph decomposition
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology
Discovery of application workloads from network file traces
FAST'10 Proceedings of the 8th USENIX conference on File and storage technologies
Finding similar failures using callstack similarity
SysML'08 Proceedings of the Third conference on Tackling computer systems problems with machine learning techniques
Genetic representation and evolvability of modular neural controllers
IEEE Computational Intelligence Magazine
Prenominal modifier ordering via multiple sequence alignment
HLT '10 Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics
Comparable entity mining from comparative questions
ACL '10 Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics
Testing square-freeness of strings compressed by balanced straight line program
CATS '09 Proceedings of the Fifteenth Australasian Symposium on Computing: The Australasian Theory - Volume 94
I/O efficient algorithms for serial and parallel suffix tree construction
ACM Transactions on Database Systems (TODS)
Reducing qualitative human oracle costs associated with automatically generated test data
Proceedings of the First International Workshop on Software Test Output Validation
LAW IV '10 Proceedings of the Fourth Linguistic Annotation Workshop
Preprocessing techniques for context recognition from accelerometer data
Personal and Ubiquitous Computing
Data structures for range minimum queries in multidimensional arrays
SODA '10 Proceedings of the twenty-first annual ACM-SIAM symposium on Discrete Algorithms
Fast distance multiplication of unit-Monge matrices
SODA '10 Proceedings of the twenty-first annual ACM-SIAM symposium on Discrete Algorithms
Multiple genome alignment based on longest path in directed acyclic graphs
International Journal of Bioinformatics Research and Applications
A minimal periods algorithm with applications
CPM'10 Proceedings of the 21st annual conference on Combinatorial pattern matching
Approximate all-pairs suffix/prefix overlaps
CPM'10 Proceedings of the 21st annual conference on Combinatorial pattern matching
Finding optimal alignment and consensus of circular strings
CPM'10 Proceedings of the 21st annual conference on Combinatorial pattern matching
Parallel and distributed compressed indexes
CPM'10 Proceedings of the 21st annual conference on Combinatorial pattern matching
Prefix tree indexing for similarity search and similarity joins on genomic data
SSDBM'10 Proceedings of the 22nd international conference on Scientific and statistical database management
The longest common extension problem revisited and applications to approximate string searching
Journal of Discrete Algorithms
Indexing similar DNA sequences
AAIM'10 Proceedings of the 6th international conference on Algorithmic aspects in information and management
Varieties of regularities in weighted sequences
AAIM'10 Proceedings of the 6th international conference on Algorithmic aspects in information and management
A graphical method for reference reconciliation
DASFAA'10 Proceedings of the 15th international conference on Database systems for advanced applications
An enhanced test case selection approach for model-based testing: an industrial case study
Proceedings of the eighteenth ACM SIGSOFT international symposium on Foundations of software engineering
Algorithms and theory of computation handbook
Finding Patterns In Given Intervals
Fundamenta Informaticae
Proactive control of manufacturing processes using historical data
KES'10 Proceedings of the 14th international conference on Knowledge-based and intelligent information and engineering systems: Part II
Discovery of non-induced patterns from sequences
PRIB'10 Proceedings of the 5th IAPR international conference on Pattern recognition in bioinformatics
Website fingerprinting and identification using ordered feature sequences
ESORICS'10 Proceedings of the 15th European conference on Research in computer security
Constructing the R* consensus tree of two trees in subcubic time
ESA'10 Proceedings of the 18th annual European conference on Algorithms: Part I
Combinatorial Optimization Solutions for the Maximum Quartet Consistency Problem
Fundamenta Informaticae - RCRA 2008 Experimental Evaluation of Algorithms for Solving Problems with Combinatorial Explosion
The application of structured learning in natural language processing
Machine Translation
An experimental study of optimizing bioinformatics applications
IPDPS'06 Proceedings of the 20th international conference on Parallel and distributed processing
Algorithm engineering: bridging the gap between algorithm theory and practice
Algorithm engineering: bridging the gap between algorithm theory and practice
New Methods for Inference of Local Tree Topologies with Recombinant SNP Sequences in Populations
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Discovering almost any hidden motif from multiple sequences
ACM Transactions on Algorithms (TALG)
IEEE Transactions on Information Technology in Biomedicine
Low Disruption Transformations on Cyclic Automata
Fundamenta Informaticae - Non-Classical Models of Automata and Applications
An algorithm to solve the motif alignment problem for approximate nested tandem repeats
RECOMB-CG'10 Proceedings of the 2010 international conference on Comparative genomics
Counting and verifying maximal palindromes
SPIRE'10 Proceedings of the 17th international conference on String processing and information retrieval
Computing matching statistics and maximal exact matches on compressed full-text indexes
SPIRE'10 Proceedings of the 17th international conference on String processing and information retrieval
The gapped suffix array: a new index structure for fast approximate matching
SPIRE'10 Proceedings of the 17th international conference on String processing and information retrieval
A new algorithm for aligning nested arc-annotated sequences under arbitrary weight schemes
Theoretical Computer Science
Optimizations of local edition for evaluating similarity between monophonic musical sequences
Large Scale Semantic Access to Content (Text, Image, Video, and Sound)
An evolutionary neural network approach to intrinsic plagiarism detection
AICS'09 Proceedings of the 20th Irish conference on Artificial intelligence and cognitive science
Fast searching in packed strings
Journal of Discrete Algorithms
Suffix trees for inputs larger than main memory
Information Systems
Efficient pattern matching algorithm for memory architecture
IEEE Transactions on Very Large Scale Integration (VLSI) Systems
Toward optimal disk layout of genome scale suffix trees
SEAL'10 Proceedings of the 8th international conference on Simulated evolution and learning
Generating phrasal and sentential paraphrases: A survey of data-driven methods
Computational Linguistics
LCS approximation via embedding into locally non-repetitive strings
Information and Computation
Journal of Discrete Algorithms
Effective Computations on Sliding Windows
SIAM Journal on Computing
Probabilistic Analysis of a Motif Discovery Algorithm for Multiple Sequences
SIAM Journal on Discrete Mathematics
Approximate entity extraction in temporal databases
World Wide Web
Indexing methods for approximate dictionary searching: Comparative analysis
Journal of Experimental Algorithmics (JEA)
Recognizing objects in adversarial clutter: breaking a visual captcha
CVPR'03 Proceedings of the 2003 IEEE computer society conference on Computer vision and pattern recognition
Empirical evaluation of excluded middle vantage point forest on biological sequences workload
Proceedings of the 1st Workshop on New Trends in Similarity Search
Deciding word neighborhood with universal neighborhood automata
Theoretical Computer Science
String matching with inversions and translocations in linear average time (most of the time)
Information Processing Letters
Complex Event Detection in Extremely Resource-Constrained Wireless Sensor Networks
Mobile Networks and Applications
A Structuralist Theory of Belief Revision
Journal of Logic, Language and Information
On the generalized constrained longest common subsequence problems
Journal of Combinatorial Optimization
Theoretical Computer Science
Syntactic error detection and correction in date expressions using finite-state transducers
Natural Language Engineering
A fault-tolerant parallel text searching technique on a cluster of workstations
ACOS'06 Proceedings of the 5th WSEAS international conference on Applied computer science
Species identification based on approximate matching
COMPUTE '11 Proceedings of the Fourth Annual ACM Bangalore Conference
Representing a bilingual lexicon with suffix trees
Proceedings of the 2011 ACM Symposium on Applied Computing
Representing clones in a localized manner
Proceedings of the 5th International Workshop on Software Clones
Efficient chaining of seeds in ordered trees
IWOCA'10 Proceedings of the 21st international conference on Combinatorial algorithms
Blocked pattern matching problem and its applications in proteomics
RECOMB'11 Proceedings of the 15th Annual international conference on Research in computational molecular biology
Space-efficient substring occurrence estimation
Proceedings of the thirtieth ACM SIGMOD-SIGACT-SIGART symposium on Principles of database systems
Brainy: effective selection of data structures
Proceedings of the 32nd ACM SIGPLAN conference on Programming language design and implementation
Rapid parallel genome indexing with MapReduce
Proceedings of the second international workshop on MapReduce and its applications
Computing the longest common substring with one mismatch
Problems of Information Transmission
Have your spaghetti and eat it too: evolutionary algorithmics and post-evolutionary analysis
Genetic Programming and Evolvable Machines
Using run time traces in automated programming tutoring
Proceedings of the 16th annual joint conference on Innovation and technology in computer science education
Succinct indexes for strings, binary relations and multilabeled trees
ACM Transactions on Algorithms (TALG)
ACM Transactions on Algorithms (TALG)
Efficient similarity joins for near-duplicate detection
ACM Transactions on Database Systems (TODS)
Compressed string dictionaries
SEA'11 Proceedings of the 10th international conference on Experimental algorithms
A discussion of the role of user trails in web applications
Journal of Web Engineering
PAKDD'11 Proceedings of the 15th Pacific-Asia conference on Advances in knowledge discovery and data mining - Volume Part I
CPM'11 Proceedings of the 22nd annual conference on Combinatorial pattern matching
Sparse and truncated suffix trees on variable-length codes
CPM'11 Proceedings of the 22nd annual conference on Combinatorial pattern matching
CPM'11 Proceedings of the 22nd annual conference on Combinatorial pattern matching
Polynomial-time approximation algorithms for weighted LCS problem
CPM'11 Proceedings of the 22nd annual conference on Combinatorial pattern matching
Refining causality: who copied from whom?
Proceedings of the 17th ACM SIGKDD international conference on Knowledge discovery and data mining
Facial recognition: an enabling technology for augmented cognition applications
FAC'11 Proceedings of the 6th international conference on Foundations of augmented cognition: directing the future of adaptive systems
Nondeterministic streaming string transducers
ICALP'11 Proceedings of the 38th international conference on Automata, languages and programming - Volume Part II
A new algorithm for sparse suffix trees
BSB'11 Proceedings of the 6th Brazilian conference on Advances in bioinformatics and computational biology
Reversing longest previous factor tables is hard
WADS'11 Proceedings of the 12th international conference on Algorithms and data structures
Adaptive context modeling for deception detection in emails
MLDM'11 Proceedings of the 7th international conference on Machine learning and data mining in pattern recognition
Implementation of sequence BDDs in Erlang
Proceedings of the 10th ACM SIGPLAN workshop on Erlang
Proceedings of the 11th ACM symposium on Document engineering
Search, adapt, and reuse: the future of scientific workflows
ACM SIGMOD Record
Clone detection in repositories of business process models
BPM'11 Proceedings of the 9th international conference on Business process management
Interaction techniques for integrated content-based enterprise search
KES'11 Proceedings of the 15th international conference on Knowledge-based and intelligent information and engineering systems - Volume Part III
An intelligent shopping list - combining digital paper with product ontologies
KES'11 Proceedings of the 15th international conference on Knowledge-based and intelligent information and engineering systems - Volume Part IV
An improved sequential clustering algorithm
AICI'11 Proceedings of the Third international conference on Artificial intelligence and computational intelligence - Volume Part I
Comparing and aggregating partially resolved trees
Theoretical Computer Science
ERA: efficient serial and parallel suffix tree construction for very long strings
Proceedings of the VLDB Endowment
Organizing the operation of radial machine sequencers for multiple PCB types
Computers and Industrial Engineering
Scalable detection of frequent substrings by grammar-based compression
DS'11 Proceedings of the 14th international conference on Discovery science
Near real-time suffix tree construction via the fringe marked ancestor problem
SPIRE'11 Proceedings of the 18th international conference on String processing and information retrieval
Computing the longest common prefix array based on the burrows-wheeler transform
SPIRE'11 Proceedings of the 18th international conference on String processing and information retrieval
Fast q-gram mining on SLP compressed strings
SPIRE'11 Proceedings of the 18th international conference on String processing and information retrieval
On suffix extensions in suffix trees
SPIRE'11 Proceedings of the 18th international conference on String processing and information retrieval
On-line construction of position heaps
SPIRE'11 Proceedings of the 18th international conference on String processing and information retrieval
Measuring spelling similarity for cognate identification
EPIA'11 Proceedings of the 15th Portugese conference on Progress in artificial intelligence
Web Site Community Analysis Based on Suffix Tree and Clustering Algorithm
WI-IAT '11 Proceedings of the 2011 IEEE/WIC/ACM International Conferences on Web Intelligence and Intelligent Agent Technology - Volume 03
Clustering-Based Learning Approach for Ant Colony Optimization Model to Simulate Web User Behavior
WI-IAT '11 Proceedings of the 2011 IEEE/WIC/ACM International Conferences on Web Intelligence and Intelligent Agent Technology - Volume 01
A text-based decision support system for financial sequence prediction
Decision Support Systems
Journal of Parallel and Distributed Computing
Transposition Rearrangement: Linear Algorithm for Length-Cost Model
Annales UMCS, Informatica
Transposition Rearrangement: Linear Algorithm for Length-Cost Model
Annales UMCS, Informatica
CAEPIA'11 Proceedings of the 14th international conference on Advances in artificial intelligence: spanish association for artificial intelligence
Summarizing a set of time series by averaging: From Steiner sequence to compact multiple alignment
Theoretical Computer Science
Reassortment Networks and the Evolution of Pandemic H1N1 Swine-Origin Influenza
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
SIAM Journal on Computing
Near Optimal Bounds for Steiner Trees in the Hypercube
SIAM Journal on Computing
Neuroevolution with analog genetic encoding
PPSN'06 Proceedings of the 9th international conference on Parallel Problem Solving from Nature
A kind of index for content-based music information retrieval and theme mining
ICADL'04 Proceedings of the 7th international Conference on Digital Libraries: international collaboration and cross-fertilization
Experimental evaluation of hierarchical hidden markov models
AI*IA'05 Proceedings of the 9th conference on Advances in Artificial Intelligence
On musical performances identification, entropy and string matching
MICAI'06 Proceedings of the 5th Mexican international conference on Artificial Intelligence
Discovering consensus patterns in biological databases
VDMB'06 Proceedings of the First international conference on Data Mining and Bioinformatics
An efficient parallel algorithm for ultrametric tree construction based on 3PR
ISPA'06 Proceedings of the 2006 international conference on Frontiers of High Performance Computing and Networking
A grid service based on suffix trees for pattern extraction from mass spectrometry proteomics data
ISPA'06 Proceedings of the 2006 international conference on Frontiers of High Performance Computing and Networking
Analysis of complex measures for the subject similarity of documents
Automatic Documentation and Mathematical Linguistics
Extracting statistics indicators from tables of basic structure
Pattern Recognition and Image Analysis
Optimal string mining under frequency constraints
PKDD'06 Proceedings of the 10th European conference on Principle and Practice of Knowledge Discovery in Databases
WABI'06 Proceedings of the 6th international conference on Algorithms in Bioinformatics
Multiple structure alignment and consensus identification for proteins
WABI'06 Proceedings of the 6th international conference on Algorithms in Bioinformatics
MEDITE: a unilingual textual aligner
FinTAL'06 Proceedings of the 5th international conference on Advances in Natural Language Processing
Transcription factor binding sites prediction based on sequence similarity
FSKD'06 Proceedings of the Third international conference on Fuzzy Systems and Knowledge Discovery
All semi-local longest common subsequences in subquadratic time
CSR'06 Proceedings of the First international computer science conference on Theory and Applications
Fast motif search in protein sequence databases
CSR'06 Proceedings of the First international computer science conference on Theory and Applications
Top-k document retrieval in optimal time and linear space
Proceedings of the twenty-third annual ACM-SIAM symposium on Discrete Algorithms
On the commonality of iris biometrics
Proceedings of the 9th International Conference on Advances in Mobile Computing and Multimedia
Geometric crossover for biological sequences
EuroGP'06 Proceedings of the 9th European conference on Genetic Programming
BioDM'06 Proceedings of the 2006 international conference on Data Mining for Biomedical Applications
Frequent subsequence-based protein localization
BioDM'06 Proceedings of the 2006 international conference on Data Mining for Biomedical Applications
Finding the position of the k-mismatch and approximate tandem repeats
SWAT'06 Proceedings of the 10th Scandinavian conference on Algorithm Theory
On the approximation hardness of some generalizations of TSP
SWAT'06 Proceedings of the 10th Scandinavian conference on Algorithm Theory
The geometry of musical rhythm
JCDCG'04 Proceedings of the 2004 Japanese conference on Discrete and Computational Geometry
A suffix tree based prediction scheme for pervasive computing environments
PCI'05 Proceedings of the 10th Panhellenic conference on Advances in Informatics
Search-Optimized suffix-tree storage for biological applications
HiPC'05 Proceedings of the 12th international conference on High Performance Computing
Parallel sequence alignment: a lookahead approach
PReMI'05 Proceedings of the First international conference on Pattern Recognition and Machine Intelligence
Textual entailment recognition based on dependency analysis and wordnet
MLCW'05 Proceedings of the First international conference on Machine Learning Challenges: evaluating Predictive Uncertainty Visual Object Classification, and Recognizing Textual Entailment
Evaluating semantic evaluations: how RTE measures up
MLCW'05 Proceedings of the First international conference on Machine Learning Challenges: evaluating Predictive Uncertainty Visual Object Classification, and Recognizing Textual Entailment
Subsequence packing: complexity, approximation, and application
AAIM'06 Proceedings of the Second international conference on Algorithmic Aspects in Information and Management
Theoretical and practical improvements on the RMQ-Problem, with applications to LCA and LCE
CPM'06 Proceedings of the 17th Annual conference on Combinatorial Pattern Matching
On-Line linear-time construction of word suffix trees
CPM'06 Proceedings of the 17th Annual conference on Combinatorial Pattern Matching
Geometric suffix tree: a new index structure for protein 3-d structures
CPM'06 Proceedings of the 17th Annual conference on Combinatorial Pattern Matching
Local alignment of RNA sequences with arbitrary scoring schemes
CPM'06 Proceedings of the 17th Annual conference on Combinatorial Pattern Matching
Computational biology – the new frontier of computer science
IWDC'04 Proceedings of the 6th international conference on Distributed Computing
A theoretical analysis of alignment and edit problems for trees
ICTCS'05 Proceedings of the 9th Italian conference on Theoretical Computer Science
A new combinatorial approach to sequence comparison
ICTCS'05 Proceedings of the 9th Italian conference on Theoretical Computer Science
Clustering and prediction of mobile user routes from cellular data
PKDD'05 Proceedings of the 9th European conference on Principles and Practice of Knowledge Discovery in Databases
Simulated annealing with injecting star-alignment for multiple sequence alignments
CIS'05 Proceedings of the 2005 international conference on Computational Intelligence and Security - Volume Part I
An algorithmic account of ehrenfeucht games on labeled successor structures
LPAR'05 Proceedings of the 12th international conference on Logic for Programming, Artificial Intelligence, and Reasoning
Protein structure abstractionand automatic clustering using secondary structure element sequences
ICCSA'05 Proceedings of the 2005 international conference on Computational Science and Its Applications - Volume Part II
Identifying information provenance in support of intelligence analysis, sharing, and protection
ISI'06 Proceedings of the 4th IEEE international conference on Intelligence and Security Informatics
An algorithm for mapping short reads to a dynamically changing genomic sequence
Journal of Discrete Algorithms
On primary and secondary repetitions in words
Theoretical Computer Science
Ultra-succinct representation of ordered trees with applications
Journal of Computer and System Sciences
Mining the change of customer behavior in fuzzy time-interval sequential patterns
Applied Soft Computing
Sparse directed acyclic word graphs
SPIRE'06 Proceedings of the 13th international conference on String Processing and Information Retrieval
SPIRE'06 Proceedings of the 13th international conference on String Processing and Information Retrieval
A compressed self-index using a ziv-lempel dictionary
SPIRE'06 Proceedings of the 13th international conference on String Processing and Information Retrieval
Dotted suffix trees a structure for approximate text indexing
SPIRE'06 Proceedings of the 13th international conference on String Processing and Information Retrieval
A new algorithm for fast all-against-all substring matching
SPIRE'06 Proceedings of the 13th international conference on String Processing and Information Retrieval
An efficient algorithm for finding long conserved regions between genes
CompLife'06 Proceedings of the Second international conference on Computational Life Sciences
O(n2 log n) time on-line construction of two-dimensional suffix trees
COCOON'05 Proceedings of the 11th annual international conference on Computing and Combinatorics
RSS feed generation from legacy HTML pages
APWeb'06 Proceedings of the 8th Asia-Pacific Web conference on Frontiers of WWW Research and Development
Faster pattern matching algorithm for arc-annotated sequences
Proceedings of the 2005 international conference on Federation over the Web
Shallow case role annotation using two-stage feature-enhanced string matching
CICLing'06 Proceedings of the 7th international conference on Computational Linguistics and Intelligent Text Processing
Multiple sequence alignment based on set covers
EuroGP'06 Proceedings of the 2006 international conference on Applications of Evolutionary Computing
Succinct text indexes on large alphabet
TAMC'06 Proceedings of the Third international conference on Theory and Applications of Models of Computation
Efficient Maximal Repeat Finding Using the Burrows-Wheeler Transform and Wavelet Tree
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Quantum Information Processing
Finding patterns with variable length gaps or don’t cares
COCOON'06 Proceedings of the 12th annual international conference on Computing and Combinatorics
String matching with mismatches by real-valued FFT
ICCSA'10 Proceedings of the 2010 international conference on Computational Science and Its Applications - Volume Part IV
Practical compressed suffix trees
SEA'10 Proceedings of the 9th international conference on Experimental Algorithms
A polynomial space and polynomial delay algorithm for enumeration of maximal motifs in a sequence
ISAAC'05 Proceedings of the 16th international conference on Algorithms and Computation
A CGM algorithm solving the longest increasing subsequence problem
ICCSA'06 Proceedings of the 2006 international conference on Computational Science and Its Applications - Volume Part V
Languages with mismatches and an application to approximate indexing
DLT'05 Proceedings of the 9th international conference on Developments in Language Theory
CPM'05 Proceedings of the 16th annual conference on Combinatorial Pattern Matching
CPM'05 Proceedings of the 16th annual conference on Combinatorial Pattern Matching
An efficient algorithm for generating super condensed neighborhoods
CPM'05 Proceedings of the 16th annual conference on Combinatorial Pattern Matching
CPM'05 Proceedings of the 16th annual conference on Combinatorial Pattern Matching
Construction of aho corasick automaton in linear time for integer alphabets
CPM'05 Proceedings of the 16th annual conference on Combinatorial Pattern Matching
An optimal algorithm for online square detection
CPM'05 Proceedings of the 16th annual conference on Combinatorial Pattern Matching
Palmprint authentication using time series
AVBPA'05 Proceedings of the 5th international conference on Audio- and Video-Based Biometric Person Authentication
On the minimum common integer partition problem
CIAC'06 Proceedings of the 6th Italian conference on Algorithms and Complexity
A new method for finding approximate repetitions in DNA sequences
WAIM '06 Proceedings of the 7th international conference on Advances in Web-Age Information Management
Fixed parameter tractability of binary near-perfect phylogenetic tree reconstruction
ICALP'06 Proceedings of the 33rd international conference on Automata, Languages and Programming - Volume Part I
Querying and embedding compressed texts
MFCS'06 Proceedings of the 31st international conference on Mathematical Foundations of Computer Science
Time and space efficient search for small alphabets with suffix arrays
FSKD'05 Proceedings of the Second international conference on Fuzzy Systems and Knowledge Discovery - Volume Part I
Learning regular expressions from noisy sequences
SARA'05 Proceedings of the 6th international conference on Abstraction, Reformulation and Approximation
A modification of the landau-vishkin algorithm computing longest common extensions via suffix arrays
BSB'05 Proceedings of the 2005 Brazilian conference on Advances in Bioinformatics and Computational Biology
Relevance of counting in data mining tasks
ADMA'05 Proceedings of the First international conference on Advanced Data Mining and Applications
Reconstructing an ultrametric galled phylogenetic network from a distance matrix
MFCS'05 Proceedings of the 30th international conference on Mathematical Foundations of Computer Science
Online and dynamic recognition of squarefree strings
MFCS'05 Proceedings of the 30th international conference on Mathematical Foundations of Computer Science
Parallel construction of large suffix trees on a PC cluster
Euro-Par'05 Proceedings of the 11th international Euro-Par conference on Parallel Processing
The core of a countably categorical structure
STACS'05 Proceedings of the 22nd annual conference on Theoretical Aspects of Computer Science
Adapting Slovak ASR for native Germans speaking Slovak
DIALECTS '11 Proceedings of the First Workshop on Algorithms and Resources for Modelling of Dialects and Language Varieties
Learning profiles based on hierarchical hidden markov model
ISMIS'05 Proceedings of the 15th international conference on Foundations of Intelligent Systems
A DNA index structure using frequency and position information of genetic alphabet
PAKDD'05 Proceedings of the 9th Pacific-Asia conference on Advances in Knowledge Discovery and Data Mining
Discriminative remote homology detection using maximal unique sequence matches
IDA'05 Proceedings of the 6th international conference on Advances in Intelligent Data Analysis
Searching for smallest grammars on large sequences and application to DNA
Journal of Discrete Algorithms
Algebraic operations on PQ trees and modular decomposition trees
WG'05 Proceedings of the 31st international conference on Graph-Theoretic Concepts in Computer Science
Feature subsumption for sentiment classification in multiple languages
PAKDD'10 Proceedings of the 14th Pacific-Asia conference on Advances in Knowledge Discovery and Data Mining - Volume Part II
Computation of infix probabilities for probabilistic context-free grammars
EMNLP '11 Proceedings of the Conference on Empirical Methods in Natural Language Processing
Multiple alignment of protein structures in three dimensions
CompLife'05 Proceedings of the First international conference on Computational Life Sciences
A linear time biclustering algorithm for time series gene expression data
WABI'05 Proceedings of the 5th International conference on Algorithms in Bioinformatics
Anomalous payload-based worm detection and signature generation
RAID'05 Proceedings of the 8th international conference on Recent Advances in Intrusion Detection
Extraction of shallow language patterns: an approximation of data oriented parsing
AI'04 Proceedings of the 17th Australian joint conference on Advances in Artificial Intelligence
On the range maximum-sum segment query problem
ISAAC'04 Proceedings of the 15th international conference on Algorithms and Computation
Randomized algorithms for motif detection
ISAAC'04 Proceedings of the 15th international conference on Algorithms and Computation
DynMap: mapping short reads to multiple related genomes
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine
Approximate string-matching with a single gap for sequence alignment
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine
Poster: fast GPU read alignment with burrows wheeler transform based index
Proceedings of the 2011 companion on High Performance Computing Networking, Storage and Analysis Companion
An optimal algorithm for detecting pseudo-squares
DGCI'06 Proceedings of the 13th international conference on Discrete Geometry for Computer Imagery
A weighted insertion-deletion stacked pair thermodynamic metric for DNA codes
DNA'04 Proceedings of the 10th international conference on DNA computing
An efficient approach to extracting approximate repeating patterns in music databases
DASFAA'05 Proceedings of the 10th international conference on Database Systems for Advanced Applications
Effectiveness of note duration information for music retrieval
DASFAA'05 Proceedings of the 10th international conference on Database Systems for Advanced Applications
Efficient q-gram filters for finding all ε-matches over a given length
RECOMB'05 Proceedings of the 9th Annual international conference on Research in Computational Molecular Biology
A fundamental decomposition theory for phylogenetic networks and incompatible characters
RECOMB'05 Proceedings of the 9th Annual international conference on Research in Computational Molecular Biology
Measuring similarity of large software systems based on source code correspondence
PROFES'05 Proceedings of the 6th international conference on Product Focused Software Process Improvement
A fast technique for constructing evolutionary tree with the application of compact sets
PaCT'05 Proceedings of the 8th international conference on Parallel Computing Technologies
Fully incremental LCS computation
FCT'05 Proceedings of the 15th international conference on Fundamentals of Computation Theory
Practical algorithms for pattern based linear regression
DS'05 Proceedings of the 8th international conference on Discovery Science
Time and space efficient algorithms for constrained sequence alignment
CIAA'04 Proceedings of the 9th international conference on Implementation and Application of Automata
An efficient pattern matching algorithm on a subclass of context free grammars
DLT'04 Proceedings of the 8th international conference on Developments in Language Theory
Approximate all-pairs suffix/prefix overlaps
Information and Computation
On-line suffix tree construction with reduced branching
Journal of Discrete Algorithms
Journal of Discrete Algorithms
Protein solvent accessibility prediction using support vector machines and sequence conservations
TAINN'05 Proceedings of the 14th Turkish conference on Artificial Intelligence and Neural Networks
Refining the progressive multiple sequence alignment score using genetic algorithms
TAINN'05 Proceedings of the 14th Turkish conference on Artificial Intelligence and Neural Networks
Large scale inference of deterministic transductions: tenjinno problem 1
ICGI'06 Proceedings of the 8th international conference on Grammatical Inference: algorithms and applications
A PQ framework for reconstructions of common ancestors and phylogeny
RCG'06 Proceedings of the RECOMB 2006 international conference on Comparative Genomics
WIND: workload-aware INtrusion detection
RAID'06 Proceedings of the 9th international conference on Recent Advances in Intrusion Detection
Matching unstructured vocabularies using a background ontology
EKAW'06 Proceedings of the 15th international conference on Managing Knowledge in a World of Networks
A fast longest common subsequence algorithm for similar strings
LATA'10 Proceedings of the 4th international conference on Language and Automata Theory and Applications
SA-REPC: sequence alignment with regular expression path constraint
LATA'10 Proceedings of the 4th international conference on Language and Automata Theory and Applications
From nondeterministic suffix automaton to lazy suffix tree
Algorithms and Applications
The bottleneck tree alignment problems
ICCSA'06 Proceedings of the 2006 international conference on Computational Science and Its Applications - Volume Part III
Simple reconstruction of binary near-perfect phylogenetic trees
ICCS'06 Proceedings of the 6th international conference on Computational Science - Volume Part II
Improving time and space complexity for compressed pattern matching
ISAAC'06 Proceedings of the 17th international conference on Algorithms and Computation
A new model for classifying DNA code inspired by neural networks and FSA
PKAW'06 Proceedings of the 9th Pacific Rim Knowledge Acquisition international conference on Advances in Knowledge Acquisition and Management
Clustering algorithms for ITS sequence data with alignment metrics
AI'06 Proceedings of the 19th Australian joint conference on Artificial Intelligence: advances in Artificial Intelligence
Polyphonic alignment algorithms for symbolic music retrieval
CMMR/ICAD'09 Proceedings of the 6th international conference on Auditory Display
Enhancing genetic algorithms by a trie-based complete solution archive
EvoCOP'10 Proceedings of the 10th European conference on Evolutionary Computation in Combinatorial Optimization
An algorithmic framework for motif discovery problems in weighted sequences
CIAC'10 Proceedings of the 7th international conference on Algorithms and Complexity
Parameterized longest previous factor
IWOCA'11 Proceedings of the 22nd international conference on Combinatorial Algorithms
p-Suffix sorting as arithmetic coding
IWOCA'11 Proceedings of the 22nd international conference on Combinatorial Algorithms
Efficient codon optimization with motif engineering
IWOCA'11 Proceedings of the 22nd international conference on Combinatorial Algorithms
Semantic components for timetabling
PATAT'04 Proceedings of the 5th international conference on Practice and Theory of Automated Timetabling
Towards real-time suffix tree construction
SPIRE'05 Proceedings of the 12th international conference on String Processing and Information Retrieval
Rank-Sensitive data structures
SPIRE'05 Proceedings of the 12th international conference on String Processing and Information Retrieval
Composite pattern discovery for PCR application
SPIRE'05 Proceedings of the 12th international conference on String Processing and Information Retrieval
Application of clustering technique in multiple sequence alignment
SPIRE'05 Proceedings of the 12th international conference on String Processing and Information Retrieval
Computing similarity of run-length encoded strings with affine gap penalty
SPIRE'05 Proceedings of the 12th international conference on String Processing and Information Retrieval
An edit distance between RNA stem-loops
SPIRE'05 Proceedings of the 12th international conference on String Processing and Information Retrieval
Information retrieval of sequential data in heterogeneous XML databases
AMR'05 Proceedings of the Third international conference on Adaptive Multimedia Retrieval: user, context, and feedback
Scoring matrices that induce metrics on sequences
LATIN'06 Proceedings of the 7th Latin American conference on Theoretical Informatics
Efficient approximate dictionary look-up for long words over small alphabets
LATIN'06 Proceedings of the 7th Latin American conference on Theoretical Informatics
A parallel algorithm for finding all successive minimal maximum subsequences
LATIN'06 Proceedings of the 7th Latin American conference on Theoretical Informatics
Clustering near-identical sequences for fast homology search
RECOMB'06 Proceedings of the 10th annual international conference on Research in Computational Molecular Biology
Efficient enumeration of phylogenetically informative substrings
RECOMB'06 Proceedings of the 10th annual international conference on Research in Computational Molecular Biology
Quadratic-time algorithm for a string constrained LCS problem
Information Processing Letters
Fast discovery of similar sequences in large genomic collections
ECIR'06 Proceedings of the 28th European conference on Advances in Information Retrieval
Filtering obfuscated email spam by means of phonetic string matching
ECIR'06 Proceedings of the 28th European conference on Advances in Information Retrieval
Efficient retrieval of approximate palindromes in a run-length encoded string
Theoretical Computer Science
A new algorithm for the characteristic string problem under loose similarity criteria
ISAAC'11 Proceedings of the 22nd international conference on Algorithms and Computation
Query languages for graph databases
ACM SIGMOD Record
Approximation techniques for clustering dissimilarity data
Neurocomputing
Parameterized longest previous factor
Theoretical Computer Science
Efficient chaining of seeds in ordered trees
Journal of Discrete Algorithms
IDE-based real-time focused search for near-miss clones
Proceedings of the 27th Annual ACM Symposium on Applied Computing
Fast and cache-oblivious dynamic programming with local dependencies
LATA'12 Proceedings of the 6th international conference on Language and Automata Theory and Applications
Searching by corpus with fingerprints
Proceedings of the 15th International Conference on Extending Database Technology
UISKEI: a sketch-based prototyping tool for defining and evaluating user interface behavior
Proceedings of the International Working Conference on Advanced Visual Interfaces
Predicting web user behavior using learning-based ant colony optimization
Engineering Applications of Artificial Intelligence
Computer Science Review
Learning to adapt cross language information extraction wrapper
Applied Intelligence
Mining statistically significant substrings using the chi-square statistic
Proceedings of the VLDB Endowment
A protein sequence analysis hardware accelerator based on divergences
International Journal of Reconfigurable Computing - Special issue on High-Performance Reconfigurable Computing
On nested palindromes in clickstream data
Proceedings of the 18th ACM SIGKDD international conference on Knowledge discovery and data mining
GPU accelerated computation of the longest common subsequence
Facing the Multicore-Challenge II
International Journal of Data Mining and Bioinformatics
Spatial context in collaborative information seeking
Journal of Information Science
Bit-parallel multiple pattern matching
PPAM'11 Proceedings of the 9th international conference on Parallel Processing and Applied Mathematics - Volume Part II
Efficient range queries over uncertain strings
SSDBM'12 Proceedings of the 24th international conference on Scientific and Statistical Database Management
Efficient similarity search in very large string sets
SSDBM'12 Proceedings of the 24th international conference on Scientific and Statistical Database Management
Minimum Unique Substrings and Maximum Repeats
Fundamenta Informaticae - Theory that Counts: To Oscar Ibarra on His 70th Birthday
Patch processing for relational learning vector quantization
ISNN'12 Proceedings of the 9th international conference on Advances in Neural Networks - Volume Part I
DLT'12 Proceedings of the 16th international conference on Developments in Language Theory
SCA: phonetic alignment based on sound classes
ESSLLI'10 Proceedings of the 2010 international conference on New Directions in Logic, Language and Computation
Efficient codon optimization with motif engineering
Journal of Discrete Algorithms
Variations of the parameterized longest previous factor
Journal of Discrete Algorithms
p-Suffix sorting as arithmetic coding
Journal of Discrete Algorithms
On suffix extensions in suffix trees
Theoretical Computer Science
Toward a General Framework for Polyphonic Comparison
Fundamenta Informaticae - Special Issue on Stringology
Faster Algorithms for Computing Maximal Multirepeats in Multiple Sequences
Fundamenta Informaticae - Special Issue on Stringology
External Memory Algorithms for String Problems
Fundamenta Informaticae - Workshop on Combinatorial Algorithms
Hierarchical Hidden Markov Models for User/Process Profile Learning
Fundamenta Informaticae - Special issue ISMIS'05
Computing the burrows-wheeler transform of a string and its reverse
CPM'12 Proceedings of the 23rd Annual conference on Combinatorial Pattern Matching
Least random suffix/prefix matches in output-sensitive time
CPM'12 Proceedings of the 23rd Annual conference on Combinatorial Pattern Matching
Time-Space trade-offs for longest common extensions
CPM'12 Proceedings of the 23rd Annual conference on Combinatorial Pattern Matching
SWAT'12 Proceedings of the 13th Scandinavian conference on Algorithm Theory
Frequent Subtree Mining - An Overview
Fundamenta Informaticae - Advances in Mining Graphs, Trees and Sequences
A Fast Algorithm for Optimal Alignment between Similar Ordered Trees
Fundamenta Informaticae - Computing Patterns in Strings
Fundamenta Informaticae - Computing Patterns in Strings
A comparison of index-based lempel-Ziv LZ77 factorization algorithms
ACM Computing Surveys (CSUR)
ACM Computing Surveys (CSUR)
Computing regularities in strings: A survey
European Journal of Combinatorics
Computing the Longest Previous Factor
European Journal of Combinatorics
European Journal of Combinatorics
Note: Extracting string motif bases for quorum higher than two
Theoretical Computer Science
Overlapping repetitions in weighted sequence
Proceedings of the CUBE International Information Technology Conference
Implicitly intersecting weighted automata using dual decomposition
NAACL HLT '12 Proceedings of the 2012 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies
Reusing debugging knowledge via trace-based bug search
Proceedings of the ACM international conference on Object oriented programming systems languages and applications
Fundamenta Informaticae
UKP: computing semantic textual similarity by combining multiple content similarity measures
SemEval '12 Proceedings of the First Joint Conference on Lexical and Computational Semantics - Volume 1: Proceedings of the main conference and the shared task, and Volume 2: Proceedings of the Sixth International Workshop on Semantic Evaluation
Similarity measures for sequential data
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery
First steps in checking and comparing Princeton WordNet and Estonian Wordnet
EACL 2012 Proceedings of the EACL 2012 Joint Workshop of LINGVIS & UNCLH
LexStat: automatic detection of cognates in multilingual wordlists
EACL 2012 Proceedings of the EACL 2012 Joint Workshop of LINGVIS & UNCLH
Expressive Languages for Path Queries over Graph-Structured Data
ACM Transactions on Database Systems (TODS)
ACCURAT toolkit for multi-level alignment and information extraction from comparable corpora
ACL '12 Proceedings of the ACL 2012 System Demonstrations
Lemmatisation as a tagging task
ACL '12 Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics: Short Papers - Volume 2
Name phylogeny: a generative model of string variation
EMNLP-CoNLL '12 Proceedings of the 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning
An efficient algorithm for identifying the most contributory substring
DaWaK'07 Proceedings of the 9th international conference on Data Warehousing and Knowledge Discovery
3-Points relationship based parallel algorithm for minimum ultrametric tree construction
PaCT'07 Proceedings of the 9th international conference on Parallel Computing Technologies
Finding patterns in given intervals
MFCS'07 Proceedings of the 32nd international conference on Mathematical Foundations of Computer Science
Structural analysis of gapped motifs of a string
MFCS'07 Proceedings of the 32nd international conference on Mathematical Foundations of Computer Science
Identification of distinguishing motifs
CPM'07 Proceedings of the 18th annual conference on Combinatorial Pattern Matching
Two-dimensional range minimum queries
CPM'07 Proceedings of the 18th annual conference on Combinatorial Pattern Matching
CPM'07 Proceedings of the 18th annual conference on Combinatorial Pattern Matching
A simple construction of two-dimensional suffix trees in linear time
CPM'07 Proceedings of the 18th annual conference on Combinatorial Pattern Matching
An optimal decomposition algorithm for tree edit distance
ICALP'07 Proceedings of the 34th international conference on Automata, Languages and Programming
ICALP'07 Proceedings of the 34th international conference on Automata, Languages and Programming
COCOON'07 Proceedings of the 13th annual international conference on Computing and Combinatorics
Alignments with non-overlapping moves, inversions and tandem duplications in O(n4) time
COCOON'07 Proceedings of the 13th annual international conference on Computing and Combinatorics
Efficient distributed computation of maximal exact matches
EuroMPI'12 Proceedings of the 19th European conference on Recent Advances in the Message Passing Interface
Malware characterization using behavioral components
MMM-ACNS'12 Proceedings of the 6th international conference on Mathematical Methods, Models and Architectures for Computer Network Security: computer network security
Unsupervised temporal commonality discovery
ECCV'12 Proceedings of the 12th European conference on Computer Vision - Volume Part IV
Restricted and swap common superstring: a parameterized view
IPEC'12 Proceedings of the 7th international conference on Parameterized and Exact Computation
Efficient indexing algorithms for approximate pattern matching in text
Proceedings of the Seventeenth Australasian Document Computing Symposium
String matching with involutions
UCNC'12 Proceedings of the 11th international conference on Unconventional Computation and Natural Computation
FOCUS: an index for continuous subsequence pattern queries
ADBIS'12 Proceedings of the 16th East European conference on Advances in Databases and Information Systems
Compressed suffix trees for repetitive texts
SPIRE'12 Proceedings of the 19th international conference on String Processing and Information Retrieval
Computing the maximal-exponent repeats of an overlap-free string in linear time
SPIRE'12 Proceedings of the 19th international conference on String Processing and Information Retrieval
Space-Efficient computation of maximal and supermaximal repeats in genome sequences
SPIRE'12 Proceedings of the 19th international conference on String Processing and Information Retrieval
Efficient data structures for the factor periodicity problem
SPIRE'12 Proceedings of the 19th international conference on String Processing and Information Retrieval
Finding consensus and optimal alignment of circular strings
Theoretical Computer Science
Approximate regional sequence matching for genomic databases
The VLDB Journal — The International Journal on Very Large Data Bases
Computing the variance of tour costs over the solution space of the TSP in polynomial time
Computational Optimization and Applications
Computing the longest common prefix array based on the Burrows-Wheeler transform
Journal of Discrete Algorithms
Near real-time suffix tree construction via the fringe marked ancestor problem
Journal of Discrete Algorithms
Fast q-gram mining on SLP compressed strings
Journal of Discrete Algorithms
Achieving scalable model-based testing through test case diversity
ACM Transactions on Software Engineering and Methodology (TOSEM)
Learning Hierarchical Lexical Hyponymy
International Journal of Cognitive Informatics and Natural Intelligence
Sophisticated phishers make more spelling mistakes: using URL similarity against phishing
CSS'12 Proceedings of the 4th international conference on Cyberspace Safety and Security
Fast detection of exact clones in business process model repositories
Information Systems
Evaluation of malware clustering based on its dynamic behaviour
AusDM '08 Proceedings of the 7th Australasian Data Mining Conference - Volume 87
Service-independent payload analysis to improve intrusion detection in network traffic
AusDM '08 Proceedings of the 7th Australasian Data Mining Conference - Volume 87
International Journal of Speech Technology
Scalable string similarity search/join with approximate seeds and multiple backtracking
Proceedings of the Joint EDBT/ICDT 2013 Workshops
An optimal algorithm for building the majority rule consensus tree
RECOMB'13 Proceedings of the 17th international conference on Research in Computational Molecular Biology
Complexity decompositions in the problem of comparison of polytene chromosome banding sequences
Pattern Recognition and Image Analysis
Proceedings of the 32nd symposium on Principles of database systems
Theoretical Computer Science
A data-driven approach for convergence prediction on road network
W2GIS'13 Proceedings of the 12th international conference on Web and Wireless Geographical Information Systems
Clustering genome data based on approximate matching
International Journal of Data Analysis Techniques and Strategies
Information Sciences: an International Journal
Trends in suffix sorting: a survey of low memory algorithms
ACSC '12 Proceedings of the Thirty-fifth Australasian Computer Science Conference - Volume 122
The bag-of-repeats representation of documents
Proceedings of the 36th international ACM SIGIR conference on Research and development in information retrieval
Attributing authorship of revisioned content
Proceedings of the 22nd international conference on World Wide Web
On parsing optimality for dictionary-based text compression-the Zip case
Journal of Discrete Algorithms
On-line construction of position heaps
Journal of Discrete Algorithms
How confident are you to counter uncertainty?
Proceedings of the First International Conference on Security of Internet of Things
Sentence fusion for multidocument news summarization
Computational Linguistics
Energy saving strategies for parallel applications with point-to-point communication phases
Journal of Parallel and Distributed Computing
Heuristic approaches for time-lagged biclustering
Proceedings of the 12th International Workshop on Data Mining in Bioinformatics
Viewing functions as token sequences to highlight similarities in source code
Science of Computer Programming
Parallel motif extraction from very long sequences
Proceedings of the 22nd ACM international conference on Conference on information & knowledge management
Building structures from classifiers for passage reranking
Proceedings of the 22nd ACM international conference on Conference on information & knowledge management
Finding frequent sub-trajectories with time constraints
Proceedings of the 2nd ACM SIGKDD International Workshop on Urban Computing
GapsMis: flexible sequence alignment with a bounded number of gaps
Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics
ChainKnot: a comparative H-type pseudoknot prediction tool using multiple ab initio folding tools
Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics
Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics
Transforming Genomes Using MOD Files with Applications
Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics
Length of stay prediction for clinical treatment process using temporal similarity
Expert Systems with Applications: An International Journal
Pareto Optimal Pairwise Sequence Alignment
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Chain-RNA: A Comparative ncRNA Search Tool Based on the Two-Dimensional Chain Algorithm
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Secure semi-supervised vector quantization for dissimilarity data
IWANN'13 Proceedings of the 12th international conference on Artificial Neural Networks: advances in computational intelligence - Volume Part I
On palindromic sequence automata and applications
CIAA'13 Proceedings of the 18th international conference on Implementation and Application of Automata
Alignment-Based metrics for trace comparison
Euro-Par'13 Proceedings of the 19th international conference on Parallel Processing
LiveAction: Automating Web Task Model Generation
ACM Transactions on Interactive Intelligent Systems (TiiS)
Spaces, Trees, and Colors: The algorithmic landscape of document retrieval on sequences
ACM Computing Surveys (CSUR)
RACE: a scalable and elastic parallel system for discovering repeats in very long sequences
Proceedings of the VLDB Endowment
RCSI: scalable similarity search in thousand(s) of genomes
Proceedings of the VLDB Endowment
Reprint of "Length of stay prediction for clinical treatment process using temporal similarity"
Expert Systems with Applications: An International Journal
Taupe: Visualizing and analyzing eye-tracking data
Science of Computer Programming
Synthesizing union tables from the web
IJCAI'13 Proceedings of the Twenty-Third international joint conference on Artificial Intelligence
Ensemble clustering by means of clustering embedding in vector spaces
Pattern Recognition
Fast Longest Common Subsequence with General Integer Scoring Support on GPUs
Proceedings of Programming Models and Applications on Multicores and Manycores
Efficient Parallel Implementations of Multiple Sequence Alignment using BSP/CGM Model
Proceedings of Programming Models and Applications on Multicores and Manycores
A method based on shape-similarity for detecting similar opinions in group decision-making
Information Sciences: an International Journal
Journal of Discrete Algorithms
Inferring strings from suffix trees and links on a binary alphabet
Discrete Applied Mathematics
Algorithms for path-constrained sequence alignment
Journal of Discrete Algorithms
A probabilistic PTAS for shortest common superstring
Theoretical Computer Science
Anti-unification for Unranked Terms and Hedges
Journal of Automated Reasoning
A Compressed Suffix Tree Based Implementation With Low Peak Memory Usage
Electronic Notes in Theoretical Computer Science (ENTCS)
Determining the titles of Web pages using anchor text and link analysis
Expert Systems with Applications: An International Journal
Computing the Burrows-Wheeler transform of a string and its reverse in parallel
Journal of Discrete Algorithms
Time-space trade-offs for longest common extensions
Journal of Discrete Algorithms
Periodic pattern analysis of non-uniformly sampled stock market data
Intelligent Data Analysis
Discovery of clinical pathway patterns from event logs using probabilistic topic models
Journal of Biomedical Informatics
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