Visualizing human genes on manifolds embedded in three-dimensional space

  • Authors:
  • Wei-Chen Cheng

  • Affiliations:
  • Institute of Statistical Science, Academia Sinica, Republic of China

  • Venue:
  • ACIIDS'12 Proceedings of the 4th Asian conference on Intelligent Information and Database Systems - Volume Part II
  • Year:
  • 2012

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Abstract

This work provides a visualization tool for researchers to explore the geometry of the distribution of human protein-coding DNA in three-dimensional space by applying various manifold learning techniques, which preserve distinct relations among genes. The simulations suggest that the relations hidden among genetic sequences could be explored by the manifolds embedded in Euclidean space. Operating this software, users are able to rotate, scale and shift the three-dimensional spaces in an interactive manner.