Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar
WABI '01 Proceedings of the First International Workshop on Algorithms in Bioinformatics
An Iterative Loop Matching Approach to the Prediction of RNA Secondary Structures with Pseudoknots
CSB '03 Proceedings of the IEEE Computer Society Conference on Bioinformatics
Classifying RNA pseudoknotted structures
Theoretical Computer Science
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
CSB '04 Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference
Grammatical Inference in Bioinformatics
IEEE Transactions on Pattern Analysis and Machine Intelligence
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
CSB '05 Proceedings of the 2005 IEEE Computational Systems Bioinformatics Conference
Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Formal grammars for estimating partition functions of double-stranded chain molecules
HLT '02 Proceedings of the second international conference on Human Language Technology Research
A graphical criterion of planarity for RNA secondary structures with pseudoknots in Rivas–Eddy class
Theoretical Computer Science
Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots
International Journal of Bioinformatics Research and Applications
Improved Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots
AAIM '07 Proceedings of the 3rd international conference on Algorithmic Aspects in Information and Management
Prediction of Protein Beta-Sheets: Dynamic Programming versus Grammatical Approach
PRIB '08 Proceedings of the Third IAPR International Conference on Pattern Recognition in Bioinformatics
Pseudoknot Identification through Learning TAGRNA
PRIB '08 Proceedings of the Third IAPR International Conference on Pattern Recognition in Bioinformatics
A grammatical approach to RNA-RNA interaction prediction
Pattern Recognition
On pseudoknot-bordered words and their properties
Journal of Computer and System Sciences
Computational prediction of nucleic acid secondary structure: Methods, applications, and challenges
Theoretical Computer Science
On the Generative Power of Multiple Context-Free Grammars and Macro Grammars
IEICE - Transactions on Information and Systems
RNA Pseudoknot Folding through Inference and Identification Using TAGRNA
BICoB '09 Proceedings of the 1st International Conference on Bioinformatics and Computational Biology
Improved Algorithms for Parsing ESLTAGs: A Grammatical Model Suitable for RNA Pseudoknots
ISBRA '09 Proceedings of the 5th International Symposium on Bioinformatics Research and Applications
Lifting Prediction to Alignment of RNA Pseudoknots
RECOMB 2'09 Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology
Computing Natural Language with Biomolecules: Overview and Challenges
IWINAC '09 Proceedings of the 3rd International Work-Conference on The Interplay Between Natural and Artificial Computation: Part I: Methods and Models in Artificial and Natural Computation. A Homage to Professor Mira's Scientific Legacy
The weak generative capacity of linear tree-adjoining grammars
TAGRF '06 Proceedings of the Eighth International Workshop on Tree Adjoining Grammar and Related Formalisms
Stochastic multiple context-free grammar for RNA pseudoknot modeling
TAGRF '06 Proceedings of the Eighth International Workshop on Tree Adjoining Grammar and Related Formalisms
Problems on RNA secondary structure prediction and design
ICALP'03 Proceedings of the 30th international conference on Automata, languages and programming
Delta: a toolset for the structural analysis of biological sequences on a 3D triangular lattice
ISBRA'07 Proceedings of the 3rd international conference on Bioinformatics research and applications
Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
K-partite RNA secondary structures
WABI'09 Proceedings of the 9th international conference on Algorithms in bioinformatics
Sparsification of RNA structure prediction including pseudoknots
WABI'10 Proceedings of the 10th international conference on Algorithms in bioinformatics
Improved Algorithms for Parsing ESLTAGs: A Grammatical Model Suitable for RNA Pseudoknots
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Matrix insertion-deletion systems for bio-molecular structures
ICDCIT'11 Proceedings of the 7th international conference on Distributed computing and internet technology
A probabilistic model for sequence alignment with context-sensitive indels
RECOMB'11 Proceedings of the 15th Annual international conference on Research in computational molecular biology
RNA secondary structure prediction with simple pseudoknots based on dynamic programming
ICIC'06 Proceedings of the 2006 international conference on Computational Intelligence and Bioinformatics - Volume Part III
Linear time algorithm for parsing RNA secondary structure
WABI'05 Proceedings of the 5th International conference on Algorithms in Bioinformatics
Efficient parameterized algorithm for biopolymer structure-sequence alignment
WABI'05 Proceedings of the 5th International conference on Algorithms in Bioinformatics
Algorithms for pseudoknot classification
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine
Biocomputing: an insight from linguistics
Natural Computing: an international journal
Profiling and searching for RNA pseudoknot structures in genomes
Transactions on Computational Systems Biology II
RNA folding including pseudoknots: a new parameterized algorithm and improved upper bound
WABI'07 Proceedings of the 7th international conference on Algorithms in Bioinformatics
A local structural prediction algorithm for RNA triple helix structure
PRIB'13 Proceedings of the 8th IAPR international conference on Pattern Recognition in Bioinformatics
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