Two Methods for Improving Performance of a HMM and their Application for Gene Finding

A Gibbs sampling method to detect over-represented motifs in the upstream regions of co-expressed genes

RECOMB '01 Proceedings of the fifth annual international conference on Computational biology

Predicting the Future of Discrete Sequences from Fractal Representations of the Past

Machine Learning

The consensus string problem and the complexity of comparing hidden Markov models

Journal of Computer and System Sciences - Computational biology 2002

Combining phylogenetic and hidden Markov models in biosequence analysis

RECOMB '03 Proceedings of the seventh annual international conference on Research in computational molecular biology

Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals

RECOMB '03 Proceedings of the seventh annual international conference on Research in computational molecular biology

Comparing a Hidden Markov Model and a Stochastic Context-Free Grammar

WABI '01 Proceedings of the First International Workshop on Algorithms in Bioinformatics

Complexity of Comparing Hidden Markov Models

ISAAC '01 Proceedings of the 12th International Symposium on Algorithms and Computation

A Better Method for Length Distribution Modeling in HMMs and Its Application to Gene Finding

CPM '02 Proceedings of the 13th Annual Symposium on Combinatorial Pattern Matching

Comparative genomics approaches to study organism similarities and differences

Journal of Biomedical Informatics

Comparative genomics approaches to study organism similarities and differences

Computers and Biomedical Research

Recurrent neural networks with small weights implement definite memory machines

Neural Computation

Maximum likelihood and conditional maximum likelihood learning algorithms for hidden Markov models with labeled data: application to transmembrane protein topology prediction

ICCMSE '03 Proceedings of the international conference on Computational methods in sciences and engineering

Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences

Future Generation Computer Systems

The most probable annotation problem in HMMs and its application to bioinformatics

Journal of Computer and System Sciences

An artificial neural network method for combining gene prediction based on equitable weights

Neurocomputing

Hidden Markov models in biological sequence analysis

IBM Journal of Research and Development

Advancing the state of the art in computational gene prediction

KDECB'06 Proceedings of the 1st international conference on Knowledge discovery and emergent complexity in bioinformatics

A Markovian approach for the segmentation of chimpanzee genome

BIRD'07 Proceedings of the 1st international conference on Bioinformatics research and development

Donor recognition synthesis method base on simulate anneal

LSMS'07 Proceedings of the Life system modeling and simulation 2007 international conference on Bio-Inspired computational intelligence and applications

Speeding up Bayesian HMM by the four Russians method

WABI'11 Proceedings of the 11th international conference on Algorithms in bioinformatics

A method to design standard HMMs with desired length distribution for biological sequence analysis

WABI'06 Proceedings of the 6th international conference on Algorithms in Bioinformatics

Interpolated hidden markov models estimated using conditional ML for eukaryotic gene annotation

ICIC'06 Proceedings of the 2006 international conference on Computational Intelligence and Bioinformatics - Volume Part III

A hidden Markov model with molecular mechanics energy-scoring function for transmembrane helix prediction

Computational Biology and Chemistry

A brief comparison of DSP and HMM methods for gene finding

Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine

Reinforcement Learning for Improving Gene Identification Accuracy by Combination of Gene-Finding Programs

International Journal of Applied Metaheuristic Computing