BlOMIND-protein property prediction by property proximity profiles
Proceedings of the 2002 ACM symposium on Applied computing
Information Retrieval Meets Gene Analysis
IEEE Intelligent Systems
Mining Information for Functional Genomics
IEEE Intelligent Systems
Sentence Filtering for Information Extraction in Genomics, a Classification Problem
PKDD '01 Proceedings of the 5th European Conference on Principles of Data Mining and Knowledge Discovery
CL '00 Proceedings of the First International Conference on Computational Logic
ILP '00 Proceedings of the 10th International Conference on Inductive Logic Programming
Ontological Design Patterns: Metadata of Molecular Biological Ontologies, Information and Knowledge
DEXA '00 Proceedings of the 11th International Conference on Database and Expert Systems Applications
A System for Building Intelligent Agents that Learn to Retrieve and Extract Information
User Modeling and User-Adapted Interaction
Using text classification to predict the gene knockout behaviour of S. Cerevisiae
APBC '03 Proceedings of the First Asia-Pacific bioinformatics conference on Bioinformatics 2003 - Volume 19
Rutabaga by any other name: extracting biological names
Journal of Biomedical Informatics - Special issue: Sublanguage
Intelligent Web agents that learn to retrieve and extract information
Intelligent exploration of the web
Bottom-up relational learning of pattern matching rules for information extraction
The Journal of Machine Learning Research
Ilp: a short look back and a longer look forward
The Journal of Machine Learning Research
Understanding captions in biomedical publications
Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining
Biological applications of multi-relational data mining
ACM SIGKDD Explorations Newsletter
Extracting molecular binding relationships from biomedical text
ANLC '00 Proceedings of the sixth conference on Applied natural language processing
Constructing an associative concept space for literature-based discovery
Journal of the American Society for Information Science and Technology
Extracting the names of genes and gene products with a hidden Markov model
COLING '00 Proceedings of the 18th conference on Computational linguistics - Volume 1
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
Journal of Biomedical Informatics
Journal of Biomedical Informatics - Special issue: Unified medical language system
Proceedings of the tenth ACM SIGKDD international conference on Knowledge discovery and data mining
Event Recognition on News Stories and Semi-Automatic Population of an Ontology
WI '04 Proceedings of the 2004 IEEE/WIC/ACM International Conference on Web Intelligence
A text-mining system for knowledge discovery from biomedical documents
IBM Systems Journal
A comparison of parsing technologies for the biomedical domain
Natural Language Engineering
Gene name identification and normalization using a model organism database
Journal of Biomedical Informatics - Special issue: Named entity recognition in biomedicine
Comparison of character-level and part of speech features for name recognition in biomedical texts
Journal of Biomedical Informatics - Special issue: Named entity recognition in biomedicine
Enhancing performance of protein and gene name recognizers with filtering and integration strategies
Journal of Biomedical Informatics - Special issue: Named entity recognition in biomedicine
Term identification in the biomedical literature
Journal of Biomedical Informatics - Special issue: Named entity recognition in biomedicine
Mining knowledge from text using information extraction
ACM SIGKDD Explorations Newsletter - Natural language processing and text mining
A baseline feature set for learning rhetorical zones using full articles in the biomedical domain
ACM SIGKDD Explorations Newsletter - Natural language processing and text mining
Comparison between tagged corpora for the named entity task
WCC '00 Proceedings of the workshop on Comparing corpora - Volume 9
Medstract: creating large-scale information servers for biomedical libraries
BioMed '02 Proceedings of the ACL-02 workshop on Natural language processing in the biomedical domain - Volume 3
XML-based NLP tools for analysing and annotating medical language
NLPXML '02 Proceedings of the 2nd workshop on NLP and XML - Volume 17
COLING-02 proceedings of the 6th conference on Natural language learning - Volume 20
Gene name extraction using FlyBase resources
BioMed '03 Proceedings of the ACL 2003 workshop on Natural language processing in biomedicine - Volume 13
Enhancing performance of protein name recognizers using collocation
BioMed '03 Proceedings of the ACL 2003 workshop on Natural language processing in biomedicine - Volume 13
Bio-medical entity extraction using Support Vector Machines
BioMed '03 Proceedings of the ACL 2003 workshop on Natural language processing in biomedicine - Volume 13
Mining semantically related terms from biomedical literature
ACM Transactions on Asian Language Information Processing (TALIP)
Extracting personal names from email: applying named entity recognition to informal text
HLT '05 Proceedings of the conference on Human Language Technology and Empirical Methods in Natural Language Processing
Data & Knowledge Engineering
Methodological Review: Extracting interactions between proteins from the literature
Journal of Biomedical Informatics
Mining and analysing scale-free protein protein interaction network
International Journal of Bioinformatics Research and Applications
Extracting Protein-Protein Interactions from MEDLINE using the Hidden Vector State model
International Journal of Bioinformatics Research and Applications
Extracting clinical trial design information from MEDLINE abstracts
New Generation Computing
Learning Recursive Patterns for Biomedical Information Extraction
Inductive Logic Programming
Finding Transport Proteins in a General Protein Database
PKDD 2007 Proceedings of the 11th European conference on Principles and Practice of Knowledge Discovery in Databases
Unsupervised Discovery of Compound Entities for Relationship Extraction
EKAW '08 Proceedings of the 16th international conference on Knowledge Engineering: Practice and Patterns
A method for extracting knowledge from medical texts including numerical representation
International Journal of Computer Applications in Technology
Proceedings of the 2009 ACM symposium on Applied Computing
Unsupervised Learning of Semantic Relations for Molecular Biology Ontologies
Proceedings of the 2008 conference on Ontology Learning and Population: Bridging the Gap between Text and Knowledge
Mining of Protein Subcellular Localizations based on a Syntactic Dependency Tree and WordNet
Proceedings of the 2008 conference on Knowledge-Based Software Engineering: Proceedings of the Eighth Joint Conference on Knowledge-Based Software Engineering
Analysis of link grammar on biomedical dependency corpus targeted at protein-protein interactions
JNLPBA '04 Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications
Zone identification in biology articles as a basis for information extraction
JNLPBA '04 Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications
Event-based information extraction for the biomedical domain: the Caderige project
JNLPBA '04 Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications
Comparison between tagged corpora for the named entity task
CompareCorpora '00 Proceedings of the Workshop on Comparing Corpora
Collaborative text-annotation resource for disease-centered relation extraction from biomedical text
Journal of Biomedical Informatics
Comparing information extraction pattern models
IEBeyondDoc '06 Proceedings of the Workshop on Information Extraction Beyond The Document
Corpus design for biomedical natural language processing
ISMB '05 Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics
IntEx: a syntactic role driven protein-protein interaction extractor for bio-medical text
ISMB '05 Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics
Unsupervised learning of semantic relations between concepts of a molecular biology ontology
IJCAI'05 Proceedings of the 19th international joint conference on Artificial intelligence
Comparative experiments on learning information extractors for proteins and their interactions
Artificial Intelligence in Medicine
Bio-medical entity extraction using support vector machines
Artificial Intelligence in Medicine
Database Note: iProLINK: an integrated protein resource for literature mining
Computational Biology and Chemistry
Distant supervision for relation extraction without labeled data
ACL '09 Proceedings of the Joint Conference of the 47th Annual Meeting of the ACL and the 4th International Joint Conference on Natural Language Processing of the AFNLP: Volume 2 - Volume 2
A machine learning approach for the curation of biomedical literature
ECIR'03 Proceedings of the 25th European conference on IR research
Learning relations from biomedical corpora using dependency trees
KDECB'06 Proceedings of the 1st international conference on Knowledge discovery and emergent complexity in bioinformatics
Learning 5000 relational extractors
ACL '10 Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics
Collective cross-document relation extraction without labelled data
EMNLP '10 Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing
Simplicity is better: revisiting single kernel PPI extraction
COLING '10 Proceedings of the 23rd International Conference on Computational Linguistics
Modeling relations and their mentions without labeled text
ECML PKDD'10 Proceedings of the 2010 European conference on Machine learning and knowledge discovery in databases: Part III
Visualization and language processing for supporting analysis across the biomedical literature
KES'10 Proceedings of the 14th international conference on Knowledge-based and intelligent information and engineering systems: Part IV
Knowledge-based weak supervision for information extraction of overlapping relations
HLT '11 Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies - Volume 1
GetItFull – a tool for downloading and pre-processing full-text journal articles
KDLL'06 Proceedings of the 2006 international conference on Knowledge Discovery in Life Science Literature
ISWC'06 Proceedings of the 5th international conference on The Semantic Web
An ontology-based pattern mining system for extracting information from biological texts
RSFDGrC'05 Proceedings of the 10th international conference on Rough Sets, Fuzzy Sets, Data Mining, and Granular Computing - Volume Part II
ISBMDA'05 Proceedings of the 6th International conference on Biological and Medical Data Analysis
Collaborative curation of data from bio-medical texts and abstracts and its integration
DILS'05 Proceedings of the Second international conference on Data Integration in the Life Sciences
Grammatical inference in practice: a case study in the biomedical domain
ICGI'06 Proceedings of the 8th international conference on Grammatical Inference: algorithms and applications
Extracting protein-protein interactions from the literature using the hidden vector state model
ICCS'06 Proceedings of the 6th international conference on Computational Science - Volume Part II
Extraction of genic interactions with the recursive logical theory of an ontology
CICLing'10 Proceedings of the 11th international conference on Computational Linguistics and Intelligent Text Processing
The EU-ADR corpus: Annotated drugs, diseases, targets, and their relationships
Journal of Biomedical Informatics
Multi-instance multi-label learning for relation extraction
EMNLP-CoNLL '12 Proceedings of the 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning
Weakly supervised training of semantic parsers
EMNLP-CoNLL '12 Proceedings of the 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning
Learning constraints for consistent timeline extraction
EMNLP-CoNLL '12 Proceedings of the 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning
Crosslingual distant supervision for extracting relations of different complexity
Proceedings of the 21st ACM international conference on Information and knowledge management
The Medical Semantic Web: Opportunities and Issues
International Journal of Information Technology and Web Engineering
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