Robust partial-parsing through incremental, multi-algorithm processing
Text-based intelligent systems
Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology
Constructing Biological Knowledge Bases by Extracting Information from Text Sources
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology
Coping with ambiguity and unknown words through probabilistic models
Computational Linguistics - Special issue on using large corpora: II
A stochastic parts program and noun phrase parser for unrestricted text
ANLC '88 Proceedings of the second conference on Applied natural language processing
A practical part-of-speech tagger
ANLC '92 Proceedings of the third conference on Applied natural language processing
Incremental finite-state parsing
ANLC '97 Proceedings of the fifth conference on Applied natural language processing
ANLC '97 Proceedings of the fifth conference on Applied natural language processing
Disambiguation of proper names in text
ANLC '97 Proceedings of the fifth conference on Applied natural language processing
Fast statistical parsing of noun phrases for document indexing
ANLC '97 Proceedings of the fifth conference on Applied natural language processing
Deterministic parsing of syntactic non-fluencies
ACL '83 Proceedings of the 21st annual meeting on Association for Computational Linguistics
A simple but useful approach to conjunct identification
ACL '92 Proceedings of the 30th annual meeting on Association for Computational Linguistics
ACL '99 Proceedings of the 37th annual meeting of the Association for Computational Linguistics on Computational Linguistics
Projecting corpus-based semantic links on a thesaurus
ACL '99 Proceedings of the 37th annual meeting of the Association for Computational Linguistics on Computational Linguistics
Concept extraction and association from cancer literature
Proceedings of the 4th international workshop on Web information and data management
Protein association discovery in biomedical literature
Proceedings of the 3rd ACM/IEEE-CS joint conference on Digital libraries
Terminology-driven mining of biomedical literature
Proceedings of the 2003 ACM symposium on Applied computing
Towards linking patients and clinical information: detecting UMLS concepts in e-mail
Journal of Biomedical Informatics - Special issue: Building nursing knowledge through infomatics: from concept representation to data mining
Journal of Biomedical Informatics - Special issue: Unified medical language system
A text-mining system for knowledge discovery from biomedical documents
IBM Systems Journal
A comparison of parsing technologies for the biomedical domain
Natural Language Engineering
Unsupervised, corpus-based method for extending a biomedical terminology
BioMed '02 Proceedings of the ACL-02 workshop on Natural language processing in the biomedical domain - Volume 3
Medstract: creating large-scale information servers for biomedical libraries
BioMed '02 Proceedings of the ACL-02 workshop on Natural language processing in the biomedical domain - Volume 3
Exploring adjectival modification in biomedical discourse across two genres
BioMed '03 Proceedings of the ACL 2003 workshop on Natural language processing in biomedicine - Volume 13
Two-phase learning for biological event extraction and verification
ACM Transactions on Asian Language Information Processing (TALIP)
Domain-specific language models and lexicons for tagging
Journal of Biomedical Informatics
The importance of the lexicon in tagging biological text
Natural Language Engineering
Ontology-driven discourse analysis for information extraction
Data & Knowledge Engineering - Special issue: Natural language and database and information systems: NLDB 03
Identifying important concepts from medical documents
Journal of Biomedical Informatics
A robust multilingual portable phrase chunking system
Expert Systems with Applications: An International Journal
Artificial Intelligence in Medicine
Assessing clinical trial eligibility with logic expression queries
Data & Knowledge Engineering
IntEx: a syntactic role driven protein-protein interaction extractor for bio-medical text
ISMB '05 Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics
Journal of Biomedical Informatics
Semantic relations for problem-oriented medical records
Artificial Intelligence in Medicine
Journal of Biomedical Informatics
GetItFull – a tool for downloading and pre-processing full-text journal articles
KDLL'06 Proceedings of the 2006 international conference on Knowledge Discovery in Life Science Literature
Exploring predicate-argument relations for named entity recognition in the molecular biology domain
DS'05 Proceedings of the 8th international conference on Discovery Science
Journal of Biomedical Informatics
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ARBITER is a Prolog program that extracts assertions about macromolecular binding relationships from biomedical text. We describe the domain knowledge and the underspecified linguistic analyses that support the identification of these predications. After discussing a formal evaluation of ARBITER, we report on its application to 491, 000 MEDLINE® abstracts, during which almost 25, 000 binding relationships suitable for entry into a database of macromolecular function were extracted.