Using Combinatory Categorial Grammar to Extract Biomedical Information
IEEE Intelligent Systems
The Frame-Based Module of the SUISEKI Information Extraction System
IEEE Intelligent Systems
Information Retrieval Meets Gene Analysis
IEEE Intelligent Systems
Mining Information for Functional Genomics
IEEE Intelligent Systems
Sentence Filtering for Information Extraction in Genomics, a Classification Problem
PKDD '01 Proceedings of the 5th European Conference on Principles of Data Mining and Knowledge Discovery
ARISTA Causal Knowledge Discovery from Texts
DS '02 Proceedings of the 5th International Conference on Discovery Science
A Multi-Level Text Mining Method to Extract Biological Relationships
CSB '02 Proceedings of the IEEE Computer Society Conference on Bioinformatics
A Literature Based Method for Identifying Gene-Disease Connections
CSB '02 Proceedings of the IEEE Computer Society Conference on Bioinformatics
From informatics to bioinformatics
APBC '03 Proceedings of the First Asia-Pacific bioinformatics conference on Bioinformatics 2003 - Volume 19
Two biomedical sublanguages: a description based on the theories of Zellig Harris
Journal of Biomedical Informatics - Special issue: Sublanguage
Rutabaga by any other name: extracting biological names
Journal of Biomedical Informatics - Special issue: Sublanguage
Automatically identifying gene/protein terms in MEDLINE abstracts
Journal of Biomedical Informatics
Understanding captions in biomedical publications
Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining
Extracting molecular binding relationships from biomedical text
ANLC '00 Proceedings of the sixth conference on Applied natural language processing
PathwayFinder: paving the way towards automatic pathway extraction
APBC '04 Proceedings of the second conference on Asia-Pacific bioinformatics - Volume 29
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
Journal of Biomedical Informatics
WI '04 Proceedings of the 2004 IEEE/WIC/ACM International Conference on Web Intelligence
A text-mining system for knowledge discovery from biomedical documents
IBM Systems Journal
A comparison of parsing technologies for the biomedical domain
Natural Language Engineering
Comparison of character-level and part of speech features for name recognition in biomedical texts
Journal of Biomedical Informatics - Special issue: Named entity recognition in biomedicine
Enhancing performance of protein and gene name recognizers with filtering and integration strategies
Journal of Biomedical Informatics - Special issue: Named entity recognition in biomedicine
Notions of correctness when evaluating protein name taggers
COLING '02 Proceedings of the 19th international conference on Computational linguistics - Volume 1
Medstract: creating large-scale information servers for biomedical libraries
BioMed '02 Proceedings of the ACL-02 workshop on Natural language processing in the biomedical domain - Volume 3
Enhancing performance of protein name recognizers using collocation
BioMed '03 Proceedings of the ACL 2003 workshop on Natural language processing in biomedicine - Volume 13
Mining semantically related terms from biomedical literature
ACM Transactions on Asian Language Information Processing (TALIP)
Two-phase learning for biological event extraction and verification
ACM Transactions on Asian Language Information Processing (TALIP)
Ontology-driven discourse analysis for information extraction
Data & Knowledge Engineering - Special issue: Natural language and database and information systems: NLDB 03
Extracting regulatory gene expression networks from PubMed
ACL '04 Proceedings of the 42nd Annual Meeting on Association for Computational Linguistics
Identifying important concepts from medical documents
Journal of Biomedical Informatics
Multi-way relation classification: application to protein-protein interactions
HLT '05 Proceedings of the conference on Human Language Technology and Empirical Methods in Natural Language Processing
POSBIOTM/W: a development workbench for machine learning oriented biomedical text mining system
HLT-Demo '05 Proceedings of HLT/EMNLP on Interactive Demonstrations
Supporting annotation layers for natural language processing
ACLdemo '05 Proceedings of the ACL 2005 on Interactive poster and demonstration sessions
Data Mining and Predictive Modeling of Biomolecular Network from Biomedical Literature Databases
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Using heuristics, syntax and a local dynamic dictionary for protein name tagging
HLT '02 Proceedings of the second international conference on Human Language Technology Research
Artificial Intelligence in Medicine
Methodological Review: Extracting interactions between proteins from the literature
Journal of Biomedical Informatics
International Journal of Bioinformatics Research and Applications
Challenges in biological literature mining for online discovery of molecular interaction pathways
International Journal of Computer Applications in Technology
Semantic annotation: mapping text to ontologies
International Journal of Metadata, Semantics and Ontologies
PubMed smarter: Query expansion with implicit words based on gene ontology
Knowledge-Based Systems
BioPPIExtractor: A protein-protein interaction extraction system for biomedical literature
Expert Systems with Applications: An International Journal
Tagging Sentence Boundaries in Biomedical Literature
CICLing '07 Proceedings of the 8th International Conference on Computational Linguistics and Intelligent Text Processing
Expert Systems with Applications: An International Journal
Assessing the correlation between contextual patterns and biological entity tagging
JNLPBA '04 Proceedings of the International Joint Workshop on Natural Language Processing in Biomedicine and its Applications
Evolutionary hypernetwork classifiers for protein-proteininteraction sentence filtering
Proceedings of the 11th Annual conference on Genetic and evolutionary computation
Event extraction from trimmed dependency graphs
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Syntactic dependency based heuristics for biological event extraction
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
Identifying interaction sentences from biological literature using automatically extracted patterns
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing
BioNoculars: extracting protein-protein interactions from biomedical text
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
Interpreting comparative constructions in biomedical text
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
Exploiting rich syntactic information for relation extraction from biomedical articles
NAACL-Short '07 Human Language Technologies 2007: The Conference of the North American Chapter of the Association for Computational Linguistics; Companion Volume, Short Papers
NLPXML '06 Proceedings of the 5th Workshop on NLP and XML: Multi-Dimensional Markup in Natural Language Processing
Assigning roles to protein mentions: The case of transcription factors
Journal of Biomedical Informatics
Corpus design for biomedical natural language processing
ISMB '05 Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics
IntEx: a syntactic role driven protein-protein interaction extractor for bio-medical text
ISMB '05 Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics
Assessment of approximate string matching in a biomedical text retrieval problem
Computers in Biology and Medicine
Proceedings of the International Conference and Workshop on Emerging Trends in Technology
Measuring prediction capacity of individual verbs for the identification of protein interactions
Journal of Biomedical Informatics
Learning rules to extract protein interactions from biomedical text
PAKDD'03 Proceedings of the 7th Pacific-Asia conference on Advances in knowledge discovery and data mining
Supporting creativity: towards associative discovery of new insights
PAKDD'08 Proceedings of the 12th Pacific-Asia conference on Advances in knowledge discovery and data mining
An IR-Aided Machine Learning Framework for the BioCreative II.5 Challenge
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology
Simplicity is better: revisiting single kernel PPI extraction
COLING '10 Proceedings of the 23rd International Conference on Computational Linguistics
Mining protein interactions from text using convolution kernels
PAKDD'09 Proceedings of the 13th Pacific-Asia international conference on Knowledge discovery and data mining: new frontiers in applied data mining
Using text to build semantic networks for pharmacogenomics
Journal of Biomedical Informatics
Visualization and language processing for supporting analysis across the biomedical literature
KES'10 Proceedings of the 14th international conference on Knowledge-based and intelligent information and engineering systems: Part IV
A hybrid approach for the extraction of semantic relations from MEDLINE abstracts
CICLing'11 Proceedings of the 12th international conference on Computational linguistics and intelligent text processing - Volume Part II
BioPubMiner: machine learning component-based biomedical information analysis platform
CIT'04 Proceedings of the 7th international conference on Intelligent Information Technology
AIS'04 Proceedings of the 13th international conference on AI, Simulation, and Planning in High Autonomy Systems
Mixture of logistic models and an ensemble approach for protein-protein interaction extraction
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational Biology and Biomedicine
Features combination for extracting gene functions from MEDLINE
ECIR'05 Proceedings of the 27th European conference on Advances in Information Retrieval Research
Semantic annotation of biomedical literature using google
ICCSA'05 Proceedings of the 2005 international conference on Computational Science and Its Applications - Volume Part III
ICCS'05 Proceedings of the 5th international conference on Computational Science - Volume Part II
Exploring predicate-argument relations for named entity recognition in the molecular biology domain
DS'05 Proceedings of the 8th international conference on Discovery Science
Collaborative curation of data from bio-medical texts and abstracts and its integration
DILS'05 Proceedings of the Second international conference on Data Integration in the Life Sciences
Mining protein-protein interactions from GeneRIFs with OpenDMAP
ISMB/ECCB'09 Proceedings of the 2009 workshop of the BioLink Special Interest Group, international conference on Linking Literature, Information, and Knowledge for Biology
Transactions on Computational Systems Biology I
Transactions on Computational Systems Biology II
Extraction of genic interactions with the recursive logical theory of an ontology
CICLing'10 Proceedings of the 11th international conference on Computational Linguistics and Intelligent Text Processing
Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Journal of Biomedical Informatics
International Journal of Data Mining and Bioinformatics
Building an annotated corpus in the molecular-biology domain
Proceedings of the COLING-2000 Workshop on Semantic Annotation and Intelligent Content
High precision rule based PPI extraction and per-pair basis performance evaluation
Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics
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