Natural language understanding (2nd ed.)
Natural language understanding (2nd ed.)
Automatic Extraction of Biological Information from Scientific Text: Protein-Protein Interactions
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology
A Pragmatic Information Extraction Strategy for Gathering Data on Genetic Interactions
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology
Concept extraction and association from cancer literature
Proceedings of the 4th international workshop on Web information and data management
Optimizing syntax patterns for discovering protein-protein interactions
Proceedings of the 2005 ACM symposium on Applied computing
Mining knowledge from text using information extraction
ACM SIGKDD Explorations Newsletter - Natural language processing and text mining
Semantic retrieval for the accurate identification of relational concepts in massive textbases
ACL-44 Proceedings of the 21st International Conference on Computational Linguistics and the 44th annual meeting of the Association for Computational Linguistics
Multi-way relation classification: application to protein-protein interactions
HLT '05 Proceedings of the conference on Human Language Technology and Empirical Methods in Natural Language Processing
COLING-ACL '06 Proceedings of the COLING/ACL on Interactive presentation sessions
Methodological Review: Extracting interactions between proteins from the literature
Journal of Biomedical Informatics
Extracting Protein-Protein Interactions from MEDLINE using the Hidden Vector State model
International Journal of Bioinformatics Research and Applications
Extracting protein-protein interactions using simple contextual features
BioNLP '06 Proceedings of the Workshop on Linking Natural Language Processing and Biology: Towards Deeper Biological Literature Analysis
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing: Shared Task
BioNLP '09 Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing
The extraction of enriched protein-protein interactions from biomedical text
BioNLP '07 Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing
EMNLP '06 Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing
Assigning roles to protein mentions: The case of transcription factors
Journal of Biomedical Informatics
ISMB '05 Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, Ontologies and Databases: Mining Biological Semantics
Comparison of similarity models for the relation discovery task
LD '06 Proceedings of the Workshop on Linguistic Distances
Comparative experiments on learning information extractors for proteins and their interactions
Artificial Intelligence in Medicine
Extracting protein-protein interactions using simple contextual features
LNLBioNLP '06 Proceedings of the HLT-NAACL BioNLP Workshop on Linking Natural Language and Biology
Journal of Biomedical Informatics
Multiple kernel learning in protein-protein interaction extraction from biomedical literature
Artificial Intelligence in Medicine
Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Using literature and data to learn Bayesian networks as clinical models of ovarian tumors
Artificial Intelligence in Medicine
Hi-index | 0.00 |
SUISEKI is an information extraction system that detects protein interactions in scientific text. It uses morphological, syntactical, and contextual information to detect gene and protein names without using organism-specific dictionaries of names, together with heuristics of how protein interactions tend to be expressed in text. The authors describe the details of the rules (so-called "frames") currently included in the system, including their intrinsic value, coverage, and performance. Although at a detailed level this approach can capture only a fraction of the interactions contained within different sentences, a clear relationship exists between the frequency of detection of interactions and the accuracy of the information obtained, to the extent that frequent interactions can be accurately detected with less than 20 percent error. The authors therefore propose that the use of predefined frames in combination with statistical and linguistical methods is a valid alternative for the analysis of interaction networks described in the molecular biology literature.