Genetic Programming and Evolvable Machines
Reducibility of gene patterns in ciliates using the breakpoint graph
Theoretical Computer Science - In honour of Professor Christian Choffrut on the occasion of his 60th birthday
A Formal Language Analysis of DNA Hairpin Structures
Fundamenta Informaticae
Simple Gene Assembly Is Deterministic
Fundamenta Informaticae - SPECIAL ISSUE ON TRAJECTORIES OF LANGUAGE THEORY Dedicated to the memory of Alexandru Mateescu
Sequential vs. parallel complexity in simple gene assembly
Theoretical Computer Science
Strategies of loop recombination in ciliates
Discrete Applied Mathematics
The many facets of natural computing
Communications of the ACM
Equivalence in template-guided recombination
Natural Computing: an international journal
Solutions to computational problems through gene assembly
Natural Computing: an international journal
Patterns of simple gene assembly in ciliates
Discrete Applied Mathematics
On the Processing Power of Protozoa
CiE '08 Proceedings of the 4th conference on Computability in Europe: Logic and Theory of Algorithms
Formal Language Tools for Template-Guided DNA Recombination
Language and Automata Theory and Applications
Extending the Overlap Graph for Gene Assembly in Ciliates
Language and Automata Theory and Applications
Decision problem for shuffled genes
Information and Computation
Graph theoretic approach to parallel gene assembly
Discrete Applied Mathematics
Three models for gene assembly in ciliates: a comparison
Proceedings of the 3rd International Conference on Bio-Inspired Models of Network, Information and Computing Sytems
The parallel complexity of signed graphs: Decidability results and an improved algorithm
Theoretical Computer Science
Minimality in template-guided recombination
Information and Computation
Extended strings and graphs for simple gene assembly
Theoretical Computer Science
Complexity measures for gene assembly
KDECB'06 Proceedings of the 1st international conference on Knowledge discovery and emergent complexity in bioinformatics
Characterizing reduction graphs for gene assembly in ciliates
DLT'07 Proceedings of the 11th international conference on Developments in language theory
Computing the graph-based parallel complexity of gene assembly
Theoretical Computer Science
Solutions to computational problems through gene assembly
DNA13'07 Proceedings of the 13th international conference on DNA computing
Equivalence in template-guided recombination
DNA13'07 Proceedings of the 13th international conference on DNA computing
Maximal pivots on graphs with an application to gene assembly
Discrete Applied Mathematics
DNA computing: a research snapshot
Algorithms and theory of computation handbook
Graph reductions, binary rank, and pivots in gene assembly
Discrete Applied Mathematics
The group structure of pivot and loop complementation on graphs and set systems
European Journal of Combinatorics
On computational properties of template-guided DNA recombination
DNA'05 Proceedings of the 11th international conference on DNA Computing
Simple operations for gene assembly
DNA'05 Proceedings of the 11th international conference on DNA Computing
Applicability of loop recombination in ciliates using the breakpoint graph
CompLife'06 Proceedings of the Second international conference on Computational Life Sciences
On hairpin-free words and languages
DLT'05 Proceedings of the 9th international conference on Developments in Language Theory
Graph transformation in molecular biology
Formal Methods in Software and Systems Modeling
Pivot and loop complementation on graphs and set systems
TAMC'10 Proceedings of the 7th annual conference on Theory and Applications of Models of Computation
The breakpoint graph in ciliates
CompLife'05 Proceedings of the First international conference on Computational Life Sciences
DNA'04 Proceedings of the 10th international conference on DNA computing
Combinatorial aspects of minimal DNA expressions
DNA'04 Proceedings of the 10th international conference on DNA computing
Simulating the process of gene assembly in ciliates
CIAA'04 Proceedings of the 9th international conference on Implementation and Application of Automata
Algebraic and topological models for DNA recombinant processes
DLT'04 Proceedings of the 8th international conference on Developments in Language Theory
Semantic shuffle on and deletion along trajectories
DLT'04 Proceedings of the 8th international conference on Developments in Language Theory
Ciliate bio-operations on finite string multisets
DLT'06 Proceedings of the 10th international conference on Developments in Language Theory
Combinatorial models of gene assembly
CiE'05 Proceedings of the First international conference on Computability in Europe: new Computational Paradigms
Directed Overlap-inclusion Graphs as Representations of Ciliate Genes
Fundamenta Informaticae - Theory that Counts: To Oscar Ibarra on His 70th Birthday
Computational Efficiency of Intermolecular Gene Assembly
Fundamenta Informaticae
A Formal Language Analysis of DNA Hairpin Structures
Fundamenta Informaticae
Simple Gene Assembly Is Deterministic
Fundamenta Informaticae - SPECIAL ISSUE ON TRAJECTORIES OF LANGUAGE THEORY Dedicated to the memory of Alexandru Mateescu
Simple gene assembly as a rewriting of directed overlap-inclusion graphs
Theoretical Computer Science
Pivots, determinants, and perfect matchings of graphs
Theoretical Computer Science
Binary Symmetric Matrix Inversion Through Local Complementation
Fundamenta Informaticae - Words, Graphs, Automata, and Languages; Special Issue Honoring the 60th Birthday of Professor Tero Harju
From micro to macro: how the overlap graph determines the reduction graph in ciliates
FCT'07 Proceedings of the 16th international conference on Fundamentals of Computation Theory
A string-based model for simple gene assembly
FCT'07 Proceedings of the 16th international conference on Fundamentals of Computation Theory
Computing through gene assembly
UC'07 Proceedings of the 6th international conference on Unconventional Computation
Making DNA Expressions Minimal
Fundamenta Informaticae
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