A taxonomy of see-through tools
CHI '94 Proceedings of the SIGCHI Conference on Human Factors in Computing Systems
A framework for unifying presentation space
Proceedings of the 14th annual ACM symposium on User interface software and technology
GeneVis: visualization tools for genetic regulatory network dynamics
Proceedings of the conference on Visualization '02
Case study: a virtual environment for genomic data visualization
Proceedings of the conference on Visualization '02
BioSim: A New Qualitative Simulation Environment for Molecular Biology
ISMB '98 Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology
Validating Graph Drawing Aesthetics
GD '95 Proceedings of the Symposium on Graph Drawing
Visualization of Biological Sequence Similarity Search Results
VIS '95 Proceedings of the 6th conference on Visualization '95
Visualization for Genome Function Analysis Using Immersive Projection Technology
VR '02 Proceedings of the IEEE Virtual Reality Conference 2002
Vision: A Computational Investigation into the Human Representation and Processing of Visual Information
Qualitative simulation of genetic regulatory networks: method and application
IJCAI'01 Proceedings of the 17th international joint conference on Artificial intelligence - Volume 1
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GeneVis simulates genetic networks and visualizes the process of this simulation interactively, providing a visual environment for exploring the dynamics of genetic regulatory networks. The visualization environment supports several representational modes, which include: an individual protein representation, a protein concentration representation, and a network structure representation. The individual protein representation shows the activities of the individual proteins. The protein concentration representation illustrates the relative spread and concentrations of the different proteins in the simulation. The network structure representation depicts the genetic network dependencies that are present in the simulation. GeneVis includes several interactive viewing tools. These include animated transitions from the individual protein representation to the protein concentration representation and from the individual protein representation to the network structure representation. Three types of lenses are used to provide different views within a representation: fuzzy lenses, base pair lenses, and the network structure ring lens. With a fuzzy lens an alternate representation can be viewed in a selected region. The base pair lenses allow users to reposition genes for better viewing or to minimize interference during the simulation. The ring lens provides detail-in-context viewing of individual levels in the genetic network structure representation.