Using Hybrid Concurrent Constraint Programming to Model Dynamic Biological Systems
ICLP '02 Proceedings of the 18th International Conference on Logic Programming
Formal Modeling of C. elegans Development: A Scenario-Based Approach
CMSB '03 Proceedings of the First International Workshop on Computational Methods in Systems Biology
Genetically induced communication network fault tolerance
Complexity - Special issue: Resilient and adaptive defense of computing networks
Multi-Agent Organisms for Persistent Computing
AAMAS '04 Proceedings of the Third International Joint Conference on Autonomous Agents and Multiagent Systems - Volume 3
Biomolecular swarms—an agent-based model of the lactose operon
Natural Computing: an international journal
Inference of gene regulatory networks using s-system and differential evolution
GECCO '05 Proceedings of the 7th annual conference on Genetic and evolutionary computation
Pattern Recognition Letters
Modelling of Biochemical Reactions by Stochastic Automata Networks
Electronic Notes in Theoretical Computer Science (ENTCS)
Stochastic oscillations in genetic regulatory networks: application to microarray experiments
EURASIP Journal on Bioinformatics and Systems Biology
Parallel Model Checking Large-Scale Genetic Regulatory Networks with DiVinE
Electronic Notes in Theoretical Computer Science (ENTCS)
Bayesian inference for a discretely observed stochastic kinetic model
Statistics and Computing
The pattern memory of gene-protein networks
AI Communications - Network Analysis in Natural Sciences and Engineering
SETN '08 Proceedings of the 5th Hellenic conference on Artificial Intelligence: Theories, Models and Applications
Abstraction for Stochastic Systems by Erlang's Method of Stages
CONCUR '08 Proceedings of the 19th international conference on Concurrency Theory
A Case for Using Signal Transition Graphs for Analysing and Refining Genetic Networks
Electronic Notes in Theoretical Computer Science (ENTCS)
Guest editorial: Computational intelligence and machine learning in bioinformatics
Artificial Intelligence in Medicine
A mathematical program to refine gene regulatory networks
Discrete Applied Mathematics
On algorithmic analysis of transcriptional regulation by LTL model checking
Theoretical Computer Science
Comparing stars: on approximating graph edit distance
Proceedings of the VLDB Endowment
Parameter Tuning of a Stochastic Biological Simulator by Metaheuristics
AI*IA '09: Proceedings of the XIth International Conference of the Italian Association for Artificial Intelligence Reggio Emilia on Emergent Perspectives in Artificial Intelligence
IEEE Transactions on Signal Processing
Knowledge discovery and emergent complexity in bioinformatics
KDECB'06 Proceedings of the 1st international conference on Knowledge discovery and emergent complexity in bioinformatics
The identification of dynamic gene-protein networks
KDECB'06 Proceedings of the 1st international conference on Knowledge discovery and emergent complexity in bioinformatics
Signaling pathway reconstruction by fusing priori knowledge
ICIC'09 Proceedings of the 5th international conference on Emerging intelligent computing technology and applications
Transactions on computational systems biology VIII
The influence of the residence time on the dynamics of catalytic reaction networks
Proceedings of the 2011 conference on Neural Nets WIRN10: Proceedings of the 20th Italian Workshop on Neural Nets
SIAM Journal on Scientific Computing
Elements of a network theory of complex adaptive systems
International Journal of Bio-Inspired Computation
Preface: Rough sets and fuzzy sets in natural computing
Theoretical Computer Science
Information systems in modeling interactive computations on granules
Theoretical Computer Science
The swarming body: simulating the decentralized defenses of immunity
ICARIS'06 Proceedings of the 5th international conference on Artificial Immune Systems
Modelling and analysing genetic networks: from boolean networks to petri nets
CMSB'06 Proceedings of the 2006 international conference on Computational Methods in Systems Biology
A numerical aggregation algorithm for the enzyme-catalyzed substrate conversion
CMSB'06 Proceedings of the 2006 international conference on Computational Methods in Systems Biology
Graph transformation in molecular biology
Formal Methods in Software and Systems Modeling
YAMONES: a computational architecture for molecular network simulation
BSB'05 Proceedings of the 2005 Brazilian conference on Advances in Bioinformatics and Computational Biology
Black box checking for biochemical networks
CMSB'04 Proceedings of the 20 international conference on Computational Methods in Systems Biology
The evolution of higher-level biochemical reaction models
Genetic Programming and Evolvable Machines
Gene regulation in the pi calculus: simulating cooperativity at the lambda switch
Transactions on Computational Systems Biology VII
An abstraction theory for qualitative models of biological systems
Theoretical Computer Science
Mean square stability of stochastic impulsive genetic regulatory networks with mixed time-delays
ISNN'12 Proceedings of the 9th international conference on Advances in Neural Networks - Volume Part I
An excursion in reaction systems: From computer science to biology
Theoretical Computer Science
Interactive information systems: Toward perception based computing
Theoretical Computer Science
A GRASP metaheuristic for microarray data analysis
Computers and Operations Research
Modelling and analysis of gene regulatory networks based on the G-network
International Journal of Advanced Intelligence Paradigms
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