Ninghui Sun

• Affiliations:

• Chinese Academy of Sciences, Beijing, P.R. China;KEY LABORATORY OF COMPUTER SYSTEM AND ARCHITECTURE,INSTITUTE OF COMPUTING TECHNOLOGY, CHINESE ACADEMY OF SCIENCES, BEIJING, CHINA;Institute of Computing Technology, Chinese Academy of Sciences, Beijing;Key Laboratory of Computer Architecture, Institute of Computing Technology;ICT, Beijing, China

• Organizations:

• China Nat. Pet. Corp.;Corporate Research Beijing;Corporate Research Beijing;Chinese Academy of Sciences and Loongson Technologies Corporation Limited;Chinese Academy of Sciences and Loongson Technologies Corporation Limited;BEIJING Union University;

• Fields:
• parallel algorithm cluster system communication system high performance computing high performance performance improvement performance metrics performance result cluster system software file system

• Impact of Page Size on Communication Performance

  Xiaocheng Zhou;Zhigang Huo;Ninghui Sun;Yingchao Zhou

  IPDPS '05 Proceedings of the 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS'05) - Workshop 9 - Volume 10

• Destructive Transaction: Human-Oriented Cluster System Management Mechanism

  Taoying Liu;Zhiwei Xu;Ninghui Sun;Dan Meng

  IPDPS '05 Proceedings of the 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS'05) - Workshop 18 - Volume 19

• An Optimized Algorithm of High Spatial-temporal Efficiency for MegaBlast

  Guangming Tan;Lin Xu;Yishan Jiao;Shengzhong Feng;Dongbo Bu;Ninghui Sun

  ICPADS '05 Proceedings of the 11th International Conference on Parallel and Distributed Systems - Workshops - Volume 02

• High Performance Sockets over Kernel Level Virtual Interface Architecture

  Zhigang Huo;Yansong Yu;Ninghui Sun

  HPCASIA '05 Proceedings of the Eighth International Conference on High-Performance Computing in Asia-Pacific Region

• A Storage Space Management Policy for a Cluster File System

  Jin Xiong;Rongfeng Tang;Zhihua Fan;Hui Li;Jie Ma;Dan Meng;Ninghui Sun

  HPCASIA '05 Proceedings of the Eighth International Conference on High-Performance Computing in Asia-Pacific Region

• Parallel Multiple Sequences Alignment in SMP Cluster

  Guangming Tan;Shengzhong Feng;Ninghui Sun

  HPCASIA '05 Proceedings of the Eighth International Conference on High-Performance Computing in Asia-Pacific Region

• Load Balancing Algorithm in Cluster-based RNA secondary structure Prediction

  Guangming Tan;Shengzhong Feng;Ninghui Sun

  ISPDC '05 Proceedings of the The 4th International Symposium on Parallel and Distributed Computing

• PhoenixG: A Unified Management Framework for Industrial Information Grid

  Jianfeng Zhan;Gengpu Liu;Lei Wang;Bibo Tu;Yi Jin;Yang Li;Yan Hao;Xuehai Hong;Dan Meng;Ninghui Sun

  CCGRID '06 Proceedings of the Sixth IEEE International Symposium on Cluster Computing and the Grid

• Research on Key Technologies of Load Balancing for NFS Server with Multiple Network Paths

  Huan Chen;Rongfeng Tang;Yi Zhao;Jin Xiong;Jie Ma;Ninghui Sun

  GCCW '06 Proceedings of the Fifth International Conference on Grid and Cooperative Computing Workshops

• Locality and parallelism optimization for dynamic programming algorithm in bioinformatics

  Guangming Tan;Shengzhong Feng;Ninghui Sun

  Proceedings of the 2006 ACM/IEEE conference on Supercomputing

• Cache oblivious algorithms for nonserial polyadic programming

  Guangming Tan;Shengzhong Feng;Ninghui Sun

  The Journal of Supercomputing

• A parallel dynamic programming algorithm on a multi-core architecture

  Guangming Tan;Ninghui Sun;Guang R. Gao

  Proceedings of the nineteenth annual ACM symposium on Parallel algorithms and architectures

• A Study of Architectural Optimization Methods in Bioinformatics Applications

  G. Tan;L. Xu;Z. Dai;S. Feng;N. Sun

  International Journal of High Performance Computing Applications

• HPP: an architecture for high performance and utility computing

  Ninghui Sun

  CHINA HPC '07 Proceedings of the 2007 Asian technology information program's (ATIP's) 3rd workshop on High performance computing in China: solution approaches to impediments for high performance computing

• The design methodology of Phoenix cluster system software stack

  Jianfeng Zhan;Lei Wang;Bibo Tu;Hui Wang;Zhihong Zhang;Yi Jin;Yu Wen;Yuansheng Chen;Peng Wang;Bizhu Qiu;Dan Meng;Ninghui Sun

  CHINA HPC '07 Proceedings of the 2007 Asian technology information program's (ATIP's) 3rd workshop on High performance computing in China: solution approaches to impediments for high performance computing

• HPP Switch: A Novel High Performance Switch for HPC

  Dawei Wang;Zheng Cao;Xinchun Liu;Ninghui Sun

  HOTI '08 Proceedings of the 2008 16th IEEE Symposium on High Performance Interconnects

• Memory Based Metadata Server for Cluster File Systems

  Jing Xing;Jin Xiong;Jie Ma;Ninghui Sun

  GCC '08 Proceedings of the 2008 Seventh International Conference on Grid and Cooperative Computing

• Improving Performance of Dynamic Programming via Parallelism and Locality on Multicore Architectures

  Guangming Tan;Ninghui Sun;Guang R. Gao

  IEEE Transactions on Parallel and Distributed Systems

• A layered design methodology of cluster system stack

  Jianfeng Zhan;Lei Wang;Bibo Tu;Zhihong Zhang;Yu Wen;Yuansheng Chen;Wei Zhou;Dan Meng;Ninghui Sun

  CLUSTER '07 Proceedings of the 2007 IEEE International Conference on Cluster Computing

• Improvement of performance of MegaBlast algorithm for DNA sequence alignment

  Guang-Ming Tan;Lin Xu;Dong-Bo Bu;Sheng-Zhong Feng;Ning-Hui Sun

  Journal of Computer Science and Technology

• Gemini NI: An Integration of Two Network Interfaces

  Kai Wang;Xiaomin Li;Xuejun An;Ninghui Sun

  NAS '09 Proceedings of the 2009 IEEE International Conference on Networking, Architecture, and Storage

• HPPNetSim: a parallel simulation of large-scale interconnection networks

  Zheng Cao;Jianwei Xu;Mingyu Chen;Gui Zheng;Huiwei Lv;Ninghui Sun

  SpringSim '09 Proceedings of the 2009 Spring Simulation Multiconference

• Adaptive and scalable metadata management to support a trillion files

  Jing Xing;Jin Xiong;Ninghui Sun;Jie Ma

  Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis

• A Parallel Algorithm for Computing Betweenness Centrality

  Guangming Tan;Dengbiao Tu;Ninghui Sun

  ICPP '09 Proceedings of the 2009 International Conference on Parallel Processing

• High-performance Computing in China: Research and Applications

  Ninghui Sun;David Kahaner;Debbie Chen

  International Journal of High Performance Computing Applications

• An experimental study of optimizing bioinformatics applications

  Guangming Tan;Lin Xu;Shengzhong Feng;Ninghui Sun

  IPDPS'06 Proceedings of the 20th international conference on Parallel and distributed processing

• Improving locality of nonserial polyadic dynamic programming

  Guangming Tan;Ninghui Sun;Dongbo Bu

  IPDPS'06 Proceedings of the 20th international conference on Parallel and distributed processing

• Adding an Expressway to Accelerate the Neighborhood Communication

  Kai Wang;Fei Chen;Zheng Cao;Xuejun An;Ninghui Sun

  HPCC '10 Proceedings of the 2010 IEEE 12th International Conference on High Performance Computing and Communications

• Building a Personal High Performance Computer with Heterogeneous Processors

  Qiang Li;Zhigang Huo;Ninghui Sun

  GCC '10 Proceedings of the 2010 Ninth International Conference on Grid and Cloud Computing

• Design and implementation of communication system of the Dawning 6000 supercomputer

  Qiang Li;Bo Li;Zhigang Huo;Ninghui Sun

  Frontiers of Computer Science in China

• HPP Controller: A System Controller Dedicated for Message Passing

  Kai Wang;Fei Chen;Zheng Cao;Xuejun An;Ninghui Sun

  PDCAT '10 Proceedings of the 2010 International Conference on Parallel and Distributed Computing, Applications and Technologies

• Accelerating 2D FFT with Non-Power-of-Two Problem Size on FPGA

  Wendi Wang;Bo Duan;Chunming Zhang;Peiheng Zhang;Ninghui Sun

  RECONFIG '10 Proceedings of the 2010 International Conference on Reconfigurable Computing and FPGAs

• Preliminary investigation of accelerating molecular dynamics simulation on Godson-T many-core processor

  Liu Peng;Guangming Tan;Rajiv K. Kalia;Aiichiro Nakano;Priya Vashishta;Dongrui Fan;Ninghui Sun

  Euro-Par 2010 Proceedings of the 2010 conference on Parallel processing

• Fast implementation of DGEMM on Fermi GPU

  Guangming Tan;Linchuan Li;Sean Triechle;Everett Phillips;Yungang Bao;Ninghui Sun

  Proceedings of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis

• Design of HPC Node with Heterogeneous Processors

  Zheng Cao;Hongwei Tang;Qiang Li;Bo Li;Fei Chen;Kai Wang;Xuejun An;Ninghui Sun

  CLUSTER '11 Proceedings of the 2011 IEEE International Conference on Cluster Computing

• Exploiting parallelization for RNA secondary structure prediction in cluster

  Guangming Tan;Shengzhong Feng;Ninghui Sun

  ICCS'05 Proceedings of the 5th international conference on Computational Science - Volume Part III

• Parallel optimization technology for backbone network intrusion detection system

  Xiaojuan Sun;Xinliang Zhou;Ninghui Sun;Mingyu Chen

  CIS'05 Proceedings of the 2005 international conference on Computational Intelligence and Security - Volume Part II

• Optimizing MPI Alltoall Communication of Large Messages in Multicore Clusters

  Qiang Li;Zhigang Huo;Ninghui Sun

  PDCAT '11 Proceedings of the 2011 12th International Conference on Parallel and Distributed Computing, Applications and Technologies

• Design of system area network interface card based on intel IOP310

  Xiaojun Yang;Lili Guo;Peiheng Zhang;Ninghui Sun

  ICESS'04 Proceedings of the First international conference on Embedded Software and Systems

• Load balancing and parallel multiple sequence alignment with tree accumulation

  Guangming Tan;Liu Peng;Shengzhong Feng;Ninghui Sun

  Euro-Par'06 Proceedings of the 12th international conference on Parallel Processing

• A coarse-grained stream architecture for cryo-electron microscopy images 3D reconstruction

  Wendi Wang;Bo Duan;Wen Tang;Chunming Zhang;Guangming Tang;Peiheng Zhang;Ninghui Sun

  Proceedings of the ACM/SIGDA international symposium on Field Programmable Gate Arrays

• An efficient dynamic programming algorithm and implementation for RNA secondary structure prediction

  Guangming Tan;Xinchun Liu;Ninghui Sun

  ICCS'05 Proceedings of the 5th international conference on Computational Science - Volume Part II

• Godson-T: An Efficient Many-Core Processor Exploring Thread-Level Parallelism

  Dongrui Fan;Hao Zhang;Da Wang;Xiaochun Ye;Fenglong Song;Guojie Li;Ninghui Sun

  IEEE Micro

• An optimized large-scale hybrid DGEMM design for CPUs and ATI GPUs

  Jiajia Li;Xingjian Li;Guangming Tan;Mingyu Chen;Ninghui Sun

  Proceedings of the 26th ACM international conference on Supercomputing

• Accelerating Millions of Short Reads Mapping on a Heterogeneous Architecture with FPGA Accelerator

  Wen Tang;Wendi Wang;Bo Duan;Chunming Zhang;Guangming Tan;Peiheng Zhang;Ninghui Sun

  FCCM '12 Proceedings of the 2012 IEEE 20th International Symposium on Field-Programmable Custom Computing Machines

• High Volume Throughput Computing: Identifying and Characterizing Throughput Oriented Workloads in Data Centers

  Jianfeng Zhan;Lixin Zhang;Ninghui Sun;Lei Wang;Zhen Jia;Chunjie Luo

  IPDPSW '12 Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum

• Investigating Memory Optimization of Hash-index for Next Generation Sequencing on Multi-core Architecture

  Wendi Wang;Wen Tang;Linchuan Li;Guangming Tan;Peiheng Zhang;Ninghui Sun

  IPDPSW '12 Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum

• Characterization of real workloads of web search engines

  Huafeng Xi;Jianfeng Zhan;Zhen Jia;Xuehai Hong;Lei Wang;Lixin Zhang;Ninghui Sun;Gang Lu

  IISWC '11 Proceedings of the 2011 IEEE International Symposium on Workload Characterization

• A Case Study of Designing Efficient Algorithm-based Fault Tolerant Application for Exascale Parallelism

  Erlin Yao;Rui Wang;Mingyu Chen;Guangming Tan;Ninghui Sun

  IPDPS '12 Proceedings of the 2012 IEEE 26th International Parallel and Distributed Processing Symposium

• CRAW/P: a workload partition method for the efficient parallel simulation of manycores

  Shuai Jiao;Paolo Ienne;Xiaochun Ye;Da Wang;Dongrui Fan;Ninghui Sun

  Euro-Par'12 Proceedings of the 18th international conference on Parallel Processing

• SMAT: an input adaptive auto-tuner for sparse matrix-vector multiplication

  Jiajia Li;Guangming Tan;Mingyu Chen;Ninghui Sun

  Proceedings of the 34th ACM SIGPLAN conference on Programming language design and implementation

• Vlock: Lock virtualization mechanism for exploiting fine-grained parallelism in graph traversal algorithms

  Ninghui Sun;Guangming Tan;Xiuxia Zhang;Erlin Yao;Jie Yan

  CGO '13 Proceedings of the 2013 IEEE/ACM International Symposium on Code Generation and Optimization (CGO)

• DianNao: a small-footprint high-throughput accelerator for ubiquitous machine-learning

  Tianshi Chen;Zidong Du;Ninghui Sun;Jia Wang;Chengyong Wu;Yunji Chen;Olivier Temam

  Proceedings of the 19th international conference on Architectural support for programming languages and operating systems

• HMTT: A hybrid hardware/software tracing system for bridging the DRAM access trace's semantic gap

  Yongbing Huang;Licheng Chen;Zehan Cui;Yuan Ruan;Yungang Bao;Mingyu Chen;Ninghui Sun

  ACM Transactions on Architecture and Code Optimization (TACO)