An Alignment-Free Distance Measure for Closely Related Genomes
RECOMB-CG '08 Proceedings of the international workshop on Comparative Genomics
Computers in Biology and Medicine
A new protein motif extraction framework based on constrained co-clustering
Proceedings of the 2009 ACM symposium on Applied Computing
Intuitive Bioinformatics for Genomics Applications: Omega-Brigid Workflow Framework
IWANN '09 Proceedings of the 10th International Work-Conference on Artificial Neural Networks: Part II: Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living
Length Encoded Secondary Structure Profile for Remote Homologous Protein Detection
ICA3PP '09 Proceedings of the 9th International Conference on Algorithms and Architectures for Parallel Processing
Computational Biology and Chemistry
SPlitSSI-SVM: An algorithm to reduce the misleading and increase the strength of domain signal
Computers in Biology and Medicine
Research article: Estimating sufficient statistics in co-evolutionary analysis by mutual information
Computational Biology and Chemistry
FastWrap: an efficient wrapper for tabular data extraction from the web
IRI'09 Proceedings of the 10th IEEE international conference on Information Reuse & Integration
Flavitrack analysis of the structure and function of West Nile non-structural proteins
International Journal of Bioinformatics Research and Applications
International Journal of Bioinformatics Research and Applications
PMFastR: a new approach to multiple RNA structure alignment
WABI'09 Proceedings of the 9th international conference on Algorithms in bioinformatics
Proceedings of the 12th annual conference on Genetic and evolutionary computation
Computational Biology and Chemistry
Fast graph approaches to measure influenza transmission across geographically distributed host types
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology
Visualization of influenza protein segment HA in manifold space
ACIIDS'10 Proceedings of the Second international conference on Intelligent information and database systems: Part I
International Journal of Bioinformatics Research and Applications
BioTRON: a biological workflow management system
Proceedings of the 2011 ACM Symposium on Applied Computing
ML-Consensus: a general consensus model for variable-length transcription factor binding sites
EvoBIO'11 Proceedings of the 9th European conference on Evolutionary computation, machine learning and data mining in bioinformatics
IP6K gene discovery in plant mtDNA
CIBB'10 Proceedings of the 7th international conference on Computational intelligence methods for bioinformatics and biostatistics
A Memory Efficient Method for Structure-Based RNA Multiple Alignment
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Computers in Biology and Medicine
Subcellular Localization Prediction through Boosting Association Rules
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Visualisation of influenza A protein segments in distance invariant self-organising map
International Journal of Intelligent Information and Database Systems
International Journal of Bioinformatics Research and Applications
Building a National Distributed e-Infrastructure - PL-Grid
Phylo-Genie: engaging students in collaborative 'tree-thinking' through tabletop techniques
Proceedings of the SIGCHI Conference on Human Factors in Computing Systems
Computational Biology and Chemistry
On the comparison of sets of alternative transcripts
ISBRA'12 Proceedings of the 8th international conference on Bioinformatics Research and Applications
Reduced False Positives in PDZ Binding Prediction Using Sequence and Structural Descriptors
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
A comparative-based phylogenetic study in the evolution of 16S rRNA and rad a genes in Archaea
International Journal of Data Mining and Bioinformatics
Protein blocks versus hydrogen bonds based alphabets for protein structure classification
Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine
Direct approaches to exploit many-core architecture in bioinformatics
Future Generation Computer Systems
Computational Biology and Chemistry
International Journal of Bioinformatics Research and Applications
Performance analysis of computational approaches to solve Multiple Sequence Alignment
The Journal of Supercomputing
Alns: a new searchable and filterable sequence alignment format
International Journal of Data Mining and Bioinformatics
International Journal of Bioinformatics Research and Applications
Performance evaluation of parallel strategies in public clouds: A study with phylogenomic workflows
Future Generation Computer Systems
In silico analysis of mt 16S rRNA sequences of ocypodid crabs
International Journal of Bioinformatics Research and Applications
Protein Structure Refinement by Iterative Fragment Exchange
Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics
ngPhylo: N-Gram Modeled Proteins with Substitution Matrices for Phylogenetic Analysis
Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics
Pinda: A Web service for detection and analysis of intraspecies gene duplication events
Computer Methods and Programs in Biomedicine
International Journal of Bioinformatics Research and Applications
Hi-index | 3.84 |
Summary: The Clustal W and Clustal X multiple sequence alignment programs have been completely rewritten in C++. This will facilitate the further development of the alignment algorithms in the future and has allowed proper porting of the programs to the latest versions of Linux, Macintosh and Windows operating systems. Availability: The programs can be run on-line from the EBI web server: http://www.ebi.ac.uk/tools/clustalw2. The source code and executables for Windows, Linux and Macintosh computers are available from the EBI ftp site ftp://ftp.ebi.ac.uk/pub/software/clustalw2/ Contact: clustalw@ucd.ie