Multiple Sequence Alignment on an FPGA
ICPADS '05 Proceedings of the 11th International Conference on Parallel and Distributed Systems - Workshops - Volume 02
Implementation of the Smith-Waterman algorithm on a reconfigurable supercomputing platform
HPRCTA '07 Proceedings of the 1st international workshop on High-performance reconfigurable computing technology and applications: held in conjunction with SC07
Practical fpga programming in c
Practical fpga programming in c
Smith-Waterman implementation on a FSB-FPGA module using the Intel Accelerator Abstraction Layer
IPDPS '09 Proceedings of the 2009 IEEE International Symposium on Parallel&Distributed Processing
An Optimized System for Multiple Sequence Alignment
RECONFIG '09 Proceedings of the 2009 International Conference on Reconfigurable Computing and FPGAs
C-based design methodology for FPGA implementation of clustalW MSA
PRIB'07 Proceedings of the 2nd IAPR international conference on Pattern recognition in bioinformatics
Journal of Real-Time Image Processing
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Designing FPGA-based accelerators is a difficult and time-consuming task which can be softened by the emergence of new generations of High Level Synthesis Tools. This paper describes how the ImpulseC C-to-hardware compiler tool has been used to develop efficient hardware for a known genomic sequence alignment algorithms and reports HLL designs performance outperforming traditional hand written optimized HDL implementations.