A transformation tool for ODE based models

  • Authors:

  • Ciro B. Barbosa;Rodrigo W. dos Santos;Ronan M. Amorim;Leandro N. Ciuffo;Fairus Manfroi;Rafael S. Oliveira;Fernando O. Campos

  • Affiliations:

  • FISIOCOMP, Laboratory of Computational Physiology, Department of Computer Science, Universidade Federal de Juiz de Fora (UFJF), Juiz de Fora, MG, Brasil;FISIOCOMP, Laboratory of Computational Physiology, Department of Computer Science, Universidade Federal de Juiz de Fora (UFJF), Juiz de Fora, MG, Brasil;FISIOCOMP, Laboratory of Computational Physiology, Department of Computer Science, Universidade Federal de Juiz de Fora (UFJF), Juiz de Fora, MG, Brasil;FISIOCOMP, Laboratory of Computational Physiology, Department of Computer Science, Universidade Federal de Juiz de Fora (UFJF), Juiz de Fora, MG, Brasil;FISIOCOMP, Laboratory of Computational Physiology, Department of Computer Science, Universidade Federal de Juiz de Fora (UFJF), Juiz de Fora, MG, Brasil;FISIOCOMP, Laboratory of Computational Physiology, Department of Computer Science, Universidade Federal de Juiz de Fora (UFJF), Juiz de Fora, MG, Brasil;FISIOCOMP, Laboratory of Computational Physiology, Department of Computer Science, Universidade Federal de Juiz de Fora (UFJF), Juiz de Fora, MG, Brasil

  • Venue:
  • ICCS'06 Proceedings of the 6th international conference on Computational Science - Volume Part I
  • Year:
  • 2006

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Abstract

This paper presents a tool for prototyping ODE (Ordinary Differential Equations) based systems in the area of computational modeling. The models, tailored during the project step of the system development, are recorded in MathML, a markup language built upon XML. This design choice improves interoperability with other tools used for mathematical modeling, mainly considering that it is based on Web architecture. The resulting work is a Web portal that transforms an ODE model documented in MathML to a C++ API that offers numerical solutions for that model.