Warping search: a new metaheuristic applied to the protein structure prediction
Proceedings of the 10th annual conference on Genetic and evolutionary computation
ICARIS '08 Proceedings of the 7th international conference on Artificial Immune Systems
Viral System to Solve Optimization Problems: An Immune-Inspired Computational Intelligence Approach
ICARIS '08 Proceedings of the 7th international conference on Artificial Immune Systems
DFS Based Partial Pathways in GA for Protein Structure Prediction
PRIB '08 Proceedings of the Third IAPR International Conference on Pattern Recognition in Bioinformatics
Clone selection programming and its application to symbolic regression
Expert Systems with Applications: An International Journal
Expert Systems with Applications: An International Journal
Induction machine fault detection using clone selection programming
Expert Systems with Applications: An International Journal
Grooming of traffic using improved evolutionary algorithm in universal optical network
ICAIT '08 Proceedings of the 2008 International Conference on Advanced Infocomm Technology
Immune programming models of Cryptosporidium parvum inactivation by ozone and chlorine dioxide
Information Sciences: an International Journal
Maximal age in randomized search heuristics with aging
Proceedings of the 11th Annual conference on Genetic and evolutionary computation
Associative classification with artificial immune system
IEEE Transactions on Evolutionary Computation
Novel Memetic Algorithm for Protein Structure Prediction
AI '09 Proceedings of the 22nd Australasian Joint Conference on Advances in Artificial Intelligence
Protein structure prediction on a lattice model via multimodal optimization techniques
Proceedings of the 12th annual conference on Genetic and evolutionary computation
Proceedings of the 12th annual conference on Genetic and evolutionary computation
Twin Removal in Genetic Algorithms for Protein Structure Prediction Using Low-Resolution Model
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
On benefits and drawbacks of aging strategies for randomized search heuristics
Theoretical Computer Science
Review Article: Recent Advances in Artificial Immune Systems: Models and Applications
Applied Soft Computing
Learning factorizations in estimation of distribution algorithms using affinity propagation
Evolutionary Computation
Expert Systems with Applications: An International Journal
On discrete models and immunological algorithms for protein structure prediction
Natural Computing: an international journal
Differential evolution for protein structure prediction using the HP model
IWINAC'11 Proceedings of the 4th international conference on Interplay between natural and artificial computation - Volume Part I
Variation in artificial immune systems: hypermutations with mutation potential
ICARIS'11 Proceedings of the 10th international conference on Artificial immune systems
A memetic immunological algorithm for resource allocation problem
ICARIS'11 Proceedings of the 10th international conference on Artificial immune systems
Immunodomaince based Clonal Selection Clustering Algorithm
Applied Soft Computing
ICARIS'06 Proceedings of the 5th international conference on Artificial Immune Systems
Conflict resolution based global search operators for long protein structures prediction
ICONIP'11 Proceedings of the 18th international conference on Neural Information Processing - Volume Part I
Evolutionary multimodal optimization using the principle of locality
Information Sciences: an International Journal
Multiobjectivizing the HP model for protein structure prediction
EvoCOP'12 Proceedings of the 12th European conference on Evolutionary Computation in Combinatorial Optimization
Locality-based multiobjectivization for the HP model of protein structure prediction
Proceedings of the 14th annual conference on Genetic and evolutionary computation
Artificial immune systems for optimisation
Proceedings of the 14th annual conference companion on Genetic and evolutionary computation
Clonal selection: an immunological algorithm for global optimization over continuous spaces
Journal of Global Optimization
ICARIS'12 Proceedings of the 11th international conference on Artificial Immune Systems
A new genetic algorithm for simplified protein structure prediction
AI'12 Proceedings of the 25th Australasian joint conference on Advances in Artificial Intelligence
Protein folding with cellular automata in the 3D HP model
Proceedings of the 15th annual conference companion on Genetic and evolutionary computation
Artificial immune systems for optimisation
Proceedings of the 15th annual conference companion on Genetic and evolutionary computation
Protein structure prediction problem: formalization using quaternions
Cybernetics and Systems Analysis
Engineering Applications of Artificial Intelligence
A multiple minima genetic algorithm for protein structure prediction
Applied Soft Computing
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We present an immune algorithm (IA) inspired by the clonal selection principle, which has been designed for the protein structure prediction problem (PSP). The proposed IA employs two special mutation operators, hypermutation and hypermacromutation to allow effective searching, and an aging mechanism which is a new immune inspired operator that is devised to enforce diversity in the population during evolution. When cast as an optimization problem, the PSP can be seen as discovering a protein conformation with minimal energy. The proposed IA was tested on well-known PSP lattice models, the HP model in two-dimensional and three-dimensional square lattices', and the functional model protein, which is a more realistic biological model. Our experimental results demonstrate that the proposed IA is very competitive with the existing state-of-art algorithms for the PSP on lattice models