Accelerated volume rendering and tomographic reconstruction using texture mapping hardware
VVS '94 Proceedings of the 1994 symposium on Volume visualization
Direct volume rendering with shading via three-dimensional textures
Proceedings of the 1996 symposium on Volume visualization
High quality rendering of attributed volume data
Proceedings of the conference on Visualization '98
Two-level volume rendering — fusing MIP and DVR
Proceedings of the conference on Visualization '00
A rendering algorithm for visualizing 3D scalar fields
SIGGRAPH '88 Proceedings of the 15th annual conference on Computer graphics and interactive techniques
Optical Models for Direct Volume Rendering
IEEE Transactions on Visualization and Computer Graphics
Fast Volume Segmentation With Simultaneous Visualization Using Programmable Graphics Hardware
Proceedings of the 14th IEEE Visualization 2003 (VIS'03)
A streaming narrow-band algorithm: interactive computation and visualization of level sets
IEEE Transactions on Visualization and Computer Graphics
Journal of Biomedical Imaging
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The Berkeley DrosophilaTranscription Network Project (BDTNP) is developing a suite of methods that will allow a quantitative description and analysis of three dimensional (3D) gene expression patterns in an animal with cel- lular resolution. An important component of this approach are algorithms that segment 3D images of an organism into individual nuclei and cells and measure relative levels of gene expression. As part of the BDTNP, we are devel- oping tools for interactive visualization, control, and verification of these algorithms. Here we present a volume visualization prototype system that, combined with user interaction tools, supports validation and quantitative determination of the accuracy of nuclear segmentation. Visualizations of nuclei are combined with information obtained from a nuclear segmentation mask, supporting the comparison of raw data and its segmentation. It is possible to select individual nuclei interactively in a volume rendered image and identify incorrectly segmented objects. Integration with segmentation algorithms, implemented in MATLAB, makes it possible to modify a segmentation based on visual examination and obtain additional information about incorrectly segmented objects. This work has already led to significant improvements in segmentation accuracy and opens the way to enhanced analysis of images of complex animal morphologies.