On reconstructing species trees from gene trees in term of duplications and losses

New algorithms for the duplication-loss model

RECOMB '00 Proceedings of the fourth annual international conference on Computational molecular biology

Gene Trees and Species Trees: The Gene-Duplication Problem in Fixed-Parameter Tractable

WADS '99 Proceedings of the 6th International Workshop on Algorithms and Data Structures

On the Multiple Gene Duplication Problem

ISAAC '98 Proceedings of the 9th International Symposium on Algorithms and Computation

Analogs and Duals of teh MAST Problem for Sequences and Trees

ESA '98 Proceedings of the 6th Annual European Symposium on Algorithms

Reconciliation problems for duplication, loss and horizontal gene transfer

RECOMB '04 Proceedings of the eighth annual international conference on Resaerch in computational molecular biology

DLS-trees: a model of evolutionary scenarios

Theoretical Computer Science

An Ω(n^2/ log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)

A scalable parallelization of the gene duplication problem

Journal of Parallel and Distributed Computing

Heuristics for the gene-duplication problem: a Θ(n) speed-up for the local search

RECOMB'07 Proceedings of the 11th annual international conference on Research in computational molecular biology

Reconciling gene trees with apparent polytomies

COCOON'06 Proceedings of the 12th annual international conference on Computing and Combinatorics

Evolution of tandemly repeated sequences through duplication and inversion

RCG'06 Proceedings of the RECOMB 2006 international conference on Comparative Genomics

On the structure of reconciliations

RCG'04 Proceedings of the 2004 RECOMB international conference on Comparative Genomics

An Ω(n2/ log n) speed-up of TBR heuristics for the gene-duplication problem

WABI'07 Proceedings of the 7th international conference on Algorithms in Bioinformatics