Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data

Context-specific Bayesian clustering for gene expression data

RECOMB '01 Proceedings of the fifth annual international conference on Computational biology

A Computational Biology Database Digest: Data, Data Analysis, and Data Management

Distributed and Parallel Databases

Fast algorithm for extracting multiple unordered short motifs using bit operations

Information Sciences—Applications: An International Journal

Modeling dependencies in protein-DNA binding sites

RECOMB '03 Proceedings of the seventh annual international conference on Research in computational molecular biology

Toward Complete Genome Data Mining in Computational Biology

SWAT '00 Proceedings of the 7th Scandinavian Workshop on Algorithm Theory

A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites

WABI '01 Proceedings of the First International Workshop on Algorithms in Bioinformatics

Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data

JOBIM '00 Selected papers from the First International Conference on Computational Biology, Biology, Informatics, and Mathematics

Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling

Signal Processing - Special issue: Genomic signal processing

Meta-clustering of gene expression data and literature-based information

ACM SIGKDD Explorations Newsletter

Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks

Signal Processing

Algorithms for learning regular expressions from positive data

Information and Computation

In silico analysis of motifs in promoters of Differentially Expressed Genes in rice (Oryza sativa L.) under anoxia

International Journal of Bioinformatics Research and Applications

Improving motif refinement using hybrid expectation maximization and random projection

ISB '10 Proceedings of the International Symposium on Biocomputing

Research Article: In silico analysis of cis-acting regulatory elements in 5' regulatory regions of sucrose transporter gene families in rice (Oryza sativa Japonica) and Arabidopsis thaliana

Computational Biology and Chemistry

Finding similar patterns in microarray data

AI'05 Proceedings of the 18th Australian Joint conference on Advances in Artificial Intelligence

MoTeX: A word-based HPC tool for MoTif eXtraction

Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics