Simulating Boolean circuits on a DNA computer
RECOMB '97 Proceedings of the first annual international conference on Computational molecular biology
From Molecular Computing to Molecular Programming
DNA '00 Revised Papers from the 6th International Workshop on DNA-Based Computers: DNA Computing
DNA 7 Revised Papers from the 7th International Workshop on DNA-Based Computers: DNA Computing
Programmed Mutagenesis Is a Universal Model of Computation
DNA 7 Revised Papers from the 7th International Workshop on DNA-Based Computers: DNA Computing
Another Realization of Aqueous Computing with Peptide Nucleic Acid
DNA 7 Revised Papers from the 7th International Workshop on DNA-Based Computers: DNA Computing
From RNA Secondary Structure to Coding Theory: A Combinatorial Approach
DNA8 Revised Papers from the 8th International Workshop on DNA Based Computers: DNA Computing
Cascading Whiplash PCR with a Nicking Enzyme
DNA8 Revised Papers from the 8th International Workshop on DNA Based Computers: DNA Computing
Displacement whiplash PCR: optimized architecture and experimental validation
DNA'06 Proceedings of the 12th international conference on DNA Computing
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This paper reports three experimental achievements in our computation model based on 'whiplash' reactions. We first show that a single-stranded DNA (ssDNA) can serve as an independent machine by using a solid support technique. Second, we show how to append an arbitrary sequence, e.g. a transition state or a PCR primer, to the 3'- end of a molecular machine, thus realizing its I/O interface. Finally we demonstrate the successive state transitions for several steps on solid phase with I/O.