Algorithms for association rule mining — a general survey and comparison
ACM SIGKDD Explorations Newsletter
Creative evolutionary systems
Clustering by pattern similarity in large data sets
Proceedings of the 2002 ACM SIGMOD international conference on Management of data
Discovering local structure in gene expression data: the order-preserving submatrix problem
Proceedings of the sixth annual international conference on Computational biology
AllelesLociand the Traveling Salesman Problem
Proceedings of the 1st International Conference on Genetic Algorithms
Automatic Generation of Programs for Crawling and Walking
Proceedings of the 5th International Conference on Genetic Algorithms
Biclustering of Expression Data
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology
GECCO '02 Proceedings of the Genetic and Evolutionary Computation Conference
Fast Practical Evolutionary Timetabling
Selected Papers from AISB Workshop on Evolutionary Computing
Enhanced Biclustering on Expression Data
BIBE '03 Proceedings of the 3rd IEEE Symposium on BioInformatics and BioEngineering
d-Clusters: Capturing Subspace Correlation in a Large Data Set
ICDE '02 Proceedings of the 18th International Conference on Data Engineering
OP-Cluster: Clustering by Tendency in High Dimensional Space
ICDM '03 Proceedings of the Third IEEE International Conference on Data Mining
MaPle: A Fast Algorithm for Maximal Pattern-based Clustering
ICDM '03 Proceedings of the Third IEEE International Conference on Data Mining
Introduction to Evolutionary Computing
Introduction to Evolutionary Computing
Evolving behaviors in the iterated prisoner's dilemma
Evolutionary Computation
Order preserving clustering over multiple time course experiments
EC'05 Proceedings of the 3rd European conference on Applications of Evolutionary Computing
Evolutionary learning of hierarchical decision rules
IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics
A multi-objective approach to discover biclusters in microarray data
Proceedings of the 9th annual conference on Genetic and evolutionary computation
An overview of clustering methods
Intelligent Data Analysis
Expert Systems with Applications: An International Journal
A novel approach to detect copy number variation using segmentation and genetic algorithm
Proceedings of the 2009 ACM symposium on Applied Computing
Microarray Biclustering: A Novel Memetic Approach Based on the PISA Platform
EvoBIO '09 Proceedings of the 7th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics
Mean Square Residue Biclustering with Missing Data and Row Inversions
ISBRA '09 Proceedings of the 5th International Symposium on Bioinformatics Research and Applications
A fuzzy biclustering algorithm for social annotations
Journal of Information Science
A Hybrid Metaheuristic for Biclustering Based on Scatter Search and Genetic Algorithms
PRIB '09 Proceedings of the 4th IAPR International Conference on Pattern Recognition in Bioinformatics
BiHEA: A Hybrid Evolutionary Approach for Microarray Biclustering
BSB '09 Proceedings of the 4th Brazilian Symposium on Bioinformatics: Advances in Bioinformatics and Computational Biology
Application of reactive GRASP to the biclustering of gene expression data
ISB '10 Proceedings of the International Symposium on Biocomputing
Biclustering gene expression data using KMeans-binary PSO hybrid
ISB '10 Proceedings of the International Symposium on Biocomputing
Virtual error: a new measure for evolutionary biclustering
EvoBIO'07 Proceedings of the 5th European conference on Evolutionary computation, machine learning and data mining in bioinformatics
Evolutionary fuzzy biclustering of gene expression data
RSKT'07 Proceedings of the 2nd international conference on Rough sets and knowledge technology
Evolutionary metaheuristic for biclustering based on linear correlations among genes
Proceedings of the 2010 ACM Symposium on Applied Computing
Biclusters evaluation based on shifting and scaling patterns
IDEAL'07 Proceedings of the 8th international conference on Intelligent data engineering and automated learning
A network flow model for biclustering via optimal re-ordering of data matrices
Journal of Global Optimization
Iterated local search for biclustering of microarray data
PRIB'10 Proceedings of the 5th IAPR international conference on Pattern recognition in bioinformatics
Measuring the quality of shifting and scaling patterns in biclusters
PRIB'10 Proceedings of the 5th IAPR international conference on Pattern recognition in bioinformatics
An evolutionary approach for biclustering of gene expression data
International Journal of Bio-Inspired Computation
BSN: An automatic generation algorithm of social network data
Journal of Systems and Software
A novel probabilistic encoding for EAs applied to biclustering of microarray data
Proceedings of the 13th annual conference on Genetic and evolutionary computation
BARTMAP: A viable structure for biclustering
Neural Networks
Mining coherent biclusters with fish school search
ICSI'11 Proceedings of the Second international conference on Advances in swarm intelligence - Volume Part II
EDA-USL: unsupervised clustering algorithm based on estimation of distribution algorithm
International Journal of Wireless and Mobile Computing
An effective measure for assessing the quality of biclusters
Computers in Biology and Medicine
Parallelized Evolutionary Learning for Detection of Biclusters in Gene Expression Data
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Shifting patterns discovery in microarrays with evolutionary algorithms
KES'06 Proceedings of the 10th international conference on Knowledge-Based Intelligent Information and Engineering Systems - Volume Part II
Correlation–based scatter search for discovering biclusters from gene expression data
EvoBIO'10 Proceedings of the 8th European conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics
A new grouping genetic algorithm for clustering problems
Expert Systems with Applications: An International Journal
A Discrete Artificial Bees Colony Inspired Biclustering Algorithm
International Journal of Swarm Intelligence Research
A new measure for gene expression biclustering based on non-parametric correlation
Computer Methods and Programs in Biomedicine
| Hi-index | 0.00 |
Microarray techniques are leading to the development of sophisticated algorithms capable of extracting novel and useful knowledge from a biomedical point of view. In this work, we address the biclustering of gene expression data with evolutionary computation. Our approach is based on evolutionary algorithms, which have been proven to have excellent performance on complex problems, and searches for biclusters following a sequential covering strategy. The goal is to find biclusters of maximum size with mean squared residue lower than a given \delta. In addition, we pay special attention to the fact of looking for high-quality biclusters with large variation, i.e., with a relatively high row variance, and with a low level of overlapping among biclusters. The quality of biclusters found by our evolutionary approach is discussed and the results are compared to those reported by Cheng and Church, and Yang et al. In general, our approach, named SEBI, shows an excellent performance at finding patterns in gene expression data.