Motif discovery without alignment or enumeration (extended abstract)
RECOMB '98 Proceedings of the second annual international conference on Computational molecular biology
Stochastic node caching for memory-bounded search
AAAI '98/IAAI '98 Proceedings of the fifteenth national/tenth conference on Artificial intelligence/Innovative applications of artificial intelligence
Multiple Sequence Alignment Using Parallel Genetic Algorithms
SEAL'98 Selected papers from the Second Asia-Pacific Conference on Simulated Evolution and Learning on Simulated Evolution and Learning
Non-approximability of Weighted Multiple Sequence Alignment
COCOON '01 Proceedings of the 7th Annual International Conference on Computing and Combinatorics
Some Results on Flexible-Pattern Discovery
COM '00 Proceedings of the 11th Annual Symposium on Combinatorial Pattern Matching
Non-approximability of weighted multiple sequence alignment
Theoretical Computer Science - Computing and combinatorics
Memory-efficient A* heuristics for multiple sequence alignment
Eighteenth national conference on Artificial intelligence
CSB '02 Proceedings of the IEEE Computer Society Conference on Bioinformatics
CSB '03 Proceedings of the IEEE Computer Society Conference on Bioinformatics
The visual comparison of three sequences
VIS '91 Proceedings of the 2nd conference on Visualization '91
RECOMB '04 Proceedings of the eighth annual international conference on Resaerch in computational molecular biology
Multiple sequence alignment using tabu search
APBC '04 Proceedings of the second conference on Asia-Pacific bioinformatics - Volume 29
Multiple Sequence Alignment with Evolutionary Computation
Genetic Programming and Evolvable Machines
Average-case analysis of best-first search in two representative directed acyclic graphs
Artificial Intelligence
Pure Multiple RNA Secondary Structure Alignments: A Progressive Profile Approach
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Inverse parametric sequence alignment
Journal of Algorithms
Web data extraction based on partial tree alignment
WWW '05 Proceedings of the 14th international conference on World Wide Web
Parallel Multiple Sequences Alignment in SMP Cluster
HPCASIA '05 Proceedings of the Eighth International Conference on High-Performance Computing in Asia-Pacific Region
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Complexity results in graph reconstruction
Discrete Applied Mathematics
Genetic algorithm with ant colony optimization (GA-ACO) for multiple sequence alignment
Applied Soft Computing
A parallel LCS algorithm for biosequences alignment
Proceedings of the 2nd international conference on Scalable information systems
Multiple Sequence Alignment with Evolutionary-Progressive Method
ICANNGA '07 Proceedings of the 8th international conference on Adaptive and Natural Computing Algorithms, Part I
Learning Scoring Schemes for Sequence Alignment from Partial Examples
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Space-efficient memory-based heuristics
AAAI'04 Proceedings of the 19th national conference on Artifical intelligence
PROBCONS: probabilistic consistency-based multiple alignment of amino acid sequences
AAAI'04 Proceedings of the 19th national conference on Artifical intelligence
An improved search algorithm for optimal multiple-sequence alignment
Journal of Artificial Intelligence Research
Journal of Artificial Intelligence Research
Divide-and-conquer bidirectional search: first results
IJCAI'99 Proceedings of the 16th international joint conference on Artificial intelligence - Volume 2
Software note: Pattern-constrained multiple polypeptide sequence alignment
Computational Biology and Chemistry
Evolving consensus sequence for multiple sequence alignment with a genetic algorithm
GECCO'03 Proceedings of the 2003 international conference on Genetic and evolutionary computation: PartII
Parallel CLUSTAL W for PC clusters
ICCSA'03 Proceedings of the 2003 international conference on Computational science and its applications: PartII
A new dynamic programming algorithm for multiple sequence alignment
COCOA'07 Proceedings of the 1st international conference on Combinatorial optimization and applications
A lagrangian relaxation approach for the multiple sequence alignment problem
COCOA'07 Proceedings of the 1st international conference on Combinatorial optimization and applications
MAUSA: using simulated annealing for guide tree construction in multiple sequence alignment
AI'07 Proceedings of the 20th Australian joint conference on Advances in artificial intelligence
An FPGA-based accelerator for multiple biological sequence alignment with DIALIGN
HiPC'07 Proceedings of the 14th international conference on High performance computing
Chaos-differential evolution for multiple sequence alignment
IITA'09 Proceedings of the 3rd international conference on Intelligent information technology application
Prenominal modifier ordering via multiple sequence alignment
HLT '10 Human Language Technologies: The 2010 Annual Conference of the North American Chapter of the Association for Computational Linguistics
Mega-classification: discovering motifs in massive datastreams
AAAI'92 Proceedings of the tenth national conference on Artificial intelligence
A maximum-likelihood formulation and EM algorithm for the protein multiple alignment problem
PRIB'10 Proceedings of the 5th IAPR international conference on Pattern recognition in bioinformatics
Parallel implementation and performance characterization of MUSCLE
IPDPS'06 Proceedings of the 20th international conference on Parallel and distributed processing
Sequence diagram to colored Petri nets transformation testing: an immune system metaphor
Proceedings of the 2010 Conference of the Center for Advanced Studies on Collaborative Research
Example-based model-transformation testing
Automated Software Engineering
Multiple sequence alignment based on dynamic weighted guidance tree
International Journal of Bioinformatics Research and Applications
Process diagnostics using trace alignment: Opportunities, issues, and challenges
Information Systems
ICARIS'06 Proceedings of the 5th international conference on Artificial Immune Systems
Simulated annealing with injecting star-alignment for multiple sequence alignments
CIS'05 Proceedings of the 2005 international conference on Computational Intelligence and Security - Volume Part I
Using secondary structure information to perform multiple alignment
Transactions on Computational Systems Biology III
HGA-COFFEE: aligning multiple sequences by hybrid genetic algorithm
ADMA'05 Proceedings of the First international conference on Advanced Data Mining and Applications
Faster algorithms for optimal multiple sequence alignment based on pairwise comparisons
WABI'05 Proceedings of the 5th International conference on Algorithms in Bioinformatics
A polynomial time solvable formulation of multiple sequence alignment
RECOMB'05 Proceedings of the 9th Annual international conference on Research in Computational Molecular Biology
Multiple sequence alignment by ant colony optimization and divide-and-conquer
ICCS'06 Proceedings of the 6th international conference on Computational Science - Volume Part II
An adaptive and iterative algorithm for refining multiple sequence alignment
Computational Biology and Chemistry
A bibliography on computational molecular biology and genetics
Mathematical and Computer Modelling: An International Journal
Improved multiple sequence alignments using coupled pattern mining
Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine
Incremental clustering and expansion for faster optimal planning in decentralized POMDPs
Journal of Artificial Intelligence Research
Validating web content with senser
Proceedings of the 29th Annual Computer Security Applications Conference
Efficient Parallel Implementations of Multiple Sequence Alignment using BSP/CGM Model
Proceedings of Programming Models and Applications on Multicores and Manycores
Review article: Computational intelligence techniques in bioinformatics
Computational Biology and Chemistry
Improved Multiple Sequence Alignments Using Coupled Pattern Mining
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
A Knowledge-Based Multiple-Sequence Alignment Algorithm
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
International Journal of Computational Science and Engineering
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