Journal of Molecular Graphics
Fast and robust computation of molecular surfaces
Proceedings of the eleventh annual symposium on Computational geometry
Triangulating the surface of a molecule
Discrete Applied Mathematics - Special volume on computational molecular biology
Image-based rendering with occlusions via cubist images
Proceedings of the conference on Visualization '98
MMR: an interactive massive model rendering system using geometric and image-based acceleration
I3D '99 Proceedings of the 1999 symposium on Interactive 3D graphics
Digital Principles and Applications
Digital Principles and Applications
Textured depth meshes for real-time rendering of arbitrary scenes
EGRW '02 Proceedings of the 13th Eurographics workshop on Rendering
IRW: an incremental representation for image-based walkthroughs
Proceedings of the tenth ACM international conference on Multimedia
Dynamic maintenance and visualization of molecular surfaces
Discrete Applied Mathematics - Special issue: Computational molecular biology series issue IV
The Cg Tutorial: The Definitive Guide to Programmable Real-Time Graphics
The Cg Tutorial: The Definitive Guide to Programmable Real-Time Graphics
Fast analytical computation of Richards's smooth molecular surface
VIS '93 Proceedings of the 4th conference on Visualization '93
Capture Configuration for Image-Based Street Walkthroughs
CW '03 Proceedings of the 2003 International Conference on Cyberworlds
Computer Aided Geometric Design - Special issue: Applications of geometric modeling in the life sciences
Hardware accelerated ambient occlusion techniques on GPUs
Proceedings of the 2007 symposium on Interactive 3D graphics and games
An algebraic spline model of molecular surfaces
Proceedings of the 2007 ACM symposium on Solid and physical modeling
Visual Verification and Analysis of Cluster Detection for Molecular Dynamics
IEEE Transactions on Visualization and Computer Graphics
Higher-order level-set method and its application in biomolecular surfaces construction
Journal of Computer Science and Technology
Computer Aided Geometric Design - Special issue: Applications of geometric modeling in the life sciences
Iterative methods for visualization of implicit surfaces on GPU
ISVC'07 Proceedings of the 3rd international conference on Advances in visual computing - Volume Part I
$F^2$Dock: Fast Fourier Protein-Protein Docking
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
Fast Molecular Solvation Energetics and Forces Computation
SIAM Journal on Scientific Computing
An Algebraic Spline Model of Molecular Surfaces for Energetic Computations
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
SIAM Journal on Scientific Computing
Adaptive real-time rendering for large-scale molecular models
ISVC'06 Proceedings of the Second international conference on Advances in Visual Computing - Volume Part II
Secondary and tertiary structural fold elucidation from 3d EM maps of macromolecules
ICVGIP'06 Proceedings of the 5th Indian conference on Computer Vision, Graphics and Image Processing
BioBrowser: a framework for fast protein visualization
EUROVIS'05 Proceedings of the Seventh Joint Eurographics / IEEE VGTC conference on Visualization
Visualization for the Physical Sciences
Computer Graphics Forum
Visual abstractions of solvent pathlines near protein cavities
EuroVis'08 Proceedings of the 10th Joint Eurographics / IEEE - VGTC conference on Visualization
Coherent culling and shading for large molecular dynamics visualization
EuroVis'10 Proceedings of the 12th Eurographics / IEEE - VGTC conference on Visualization
Illustrative molecular visualization with continuous abstraction
EuroVis'11 Proceedings of the 13th Eurographics / IEEE - VGTC conference on Visualization
Improved quadric surface impostors for large bio-molecular visualization
Proceedings of the Eighth Indian Conference on Computer Vision, Graphics and Image Processing
Multi-layer screen-space ambient occlusion using hybrid sampling
Proceedings of the 12th ACM SIGGRAPH International Conference on Virtual-Reality Continuum and Its Applications in Industry
Ray tracing and volume rendering large molecular data on multi-core and many-core architectures
UltraVis '13 Proceedings of the 8th International Workshop on Ultrascale Visualization
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While molecular visualization software has advanced over the years, today, most tools still operate on individual molecular structures with limited facility to manipulate large multi-component complexes. We approach this problem by extending 3D image-based rendering via programmable graphics units, resulting in an order of magnitude speedup over traditional triangle-based rendering. By incorporating a biochemically sensitive level-of-detail hierarchy into our molecular representation, we communicate appropriate volume occupancy and shape while dramatically reducing the visual clutter that normally inhibits higher-level spatial comprehension. Our hierarchical, image based rendering also allows dynamically computed physical properties data (e.g. electrostatics potential) to be mapped onto the molecular surface, tying molecular structure to molecular function. Finally, we present another approach to interactive molecular exploration using volumetric and structural rendering in tandem to discover molecular properties that neither rendering mode alone could reveal. These visualization techniques are realized in a high-performance, interactive molecular exploration tool we call TexMol, short for Texture Molecular viewer.