A fast algorithm for particle simulations

An O(NlogN) hypercube N-body integrator

C3P Proceedings of the third conference on Hypercube concurrent computers and applications - Volume 2

How to write parallel programs: a guide to the perplexed

ACM Computing Surveys (CSUR)

An optional hypercube direct N-body solver on the connection machine

Proceedings of the 1990 ACM/IEEE conference on Supercomputing

An efficient parallel algorithm for all pairs examination

Proceedings of the 1991 ACM/IEEE conference on Supercomputing

A decomposition of multi-dimensional point-sets with applications to k-nearest-neighbors and n-body potential fields (preliminary version)

STOC '92 Proceedings of the twenty-fourth annual ACM symposium on Theory of computing

SPLASH: Stanford parallel applications for shared-memory

ACM SIGARCH Computer Architecture News

Astrophysical N-body simulations using hierarchical tree data structures

Proceedings of the 1992 ACM/IEEE conference on Supercomputing

A parallel hashed Oct-Tree N-body algorithm

Proceedings of the 1993 ACM/IEEE conference on Supercomputing

A parallel adaptive fast multipole method

Proceedings of the 1993 ACM/IEEE conference on Supercomputing

Experiences with parallel N-body simulation

SPAA '94 Proceedings of the sixth annual ACM symposium on Parallel algorithms and architectures

A decomposition of multidimensional point sets with applications to k-nearest-neighbors and n-body potential fields

Journal of the ACM (JACM)

Implications of hierarchical N-body methods for multiprocessor architectures

ACM Transactions on Computer Systems (TOCS)

A hybrid execution model for fine-grained languages on distributed memory multicomputers

Supercomputing '95 Proceedings of the 1995 ACM/IEEE conference on Supercomputing

Parallel matrix-vector product using approximate hierarchical methods

Supercomputing '95 Proceedings of the 1995 ACM/IEEE conference on Supercomputing

Efficient full-wave electromagnetic analysis via model-order reduction of fast integral transforms

DAC '96 Proceedings of the 33rd annual Design Automation Conference

Efficient time-domain simulation of frequency-dependent elements

Proceedings of the 1996 IEEE/ACM international conference on Computer-aided design

Approximate complex polynomial evaluation in near constant work per point

STOC '97 Proceedings of the twenty-ninth annual ACM symposium on Theory of computing

A fast method of moments solver for efficient parameter extraction of MCMs

DAC '97 Proceedings of the 34th annual Design Automation Conference

IES3: a fast integral equation solver for efficient 3-dimensional extraction

ICCAD '97 Proceedings of the 1997 IEEE/ACM international conference on Computer-aided design

FastPep: a fast parasitic extraction program for complex three-dimensional geometries

ICCAD '97 Proceedings of the 1997 IEEE/ACM international conference on Computer-aided design

A fast hierarchical algorithm for 3-D capacitance extraction

DAC '98 Proceedings of the 35th annual Design Automation Conference

A mixed nodal-mesh formulation for efficient extraction and passive reduced-order modeling of 3D interconnects

DAC '98 Proceedings of the 35th annual Design Automation Conference

Tools and methodology for RF IC design

DAC '98 Proceedings of the 35th annual Design Automation Conference

Distributed data structure design for scientific computation

ICS '98 Proceedings of the 12th international conference on Supercomputing

Adventures in Improving the Scaling and Accuracy of a Parallel Molecular Dynamics Program

The Journal of Supercomputing - Special issue on supercomputing in medicine

Electrostatic fields without singularities: theory, algorithms and error analysis

Journal of the ACM (JACM)

An evaluation of computing paradigms for N-body simulations on distributed memory architectures

Proceedings of the seventh ACM SIGPLAN symposium on Principles and practice of parallel programming

Efficient techniques for inductance extraction of complex 3-D geometries

ICCAD '92 Proceedings of the 1992 IEEE/ACM international conference on Computer-aided design

Efficient techniques for modeling chip-level interconnect, substrate and package parasitics

DATE '99 Proceedings of the conference on Design, automation and test in Europe

Efficient capacitance computation for structures with non-uniform adaptive surface meshes

Proceedings of the 36th annual ACM/IEEE Design Automation Conference

Interconnect analysis: from 3-D structures to circuit models

Proceedings of the 36th annual ACM/IEEE Design Automation Conference

Algorithms for dynamic closest pair and n-body potential fields

Proceedings of the sixth annual ACM-SIAM symposium on Discrete algorithms

Type systems for distributed data structures

Proceedings of the 27th ACM SIGPLAN-SIGACT symposium on Principles of programming languages

Bounded-error compression of particle data from hierarchical approximate methods

SC '99 Proceedings of the 1999 ACM/IEEE conference on Supercomputing

Large scale molecular dynamics simulations with fast multipole implementations

SC '99 Proceedings of the 1999 ACM/IEEE conference on Supercomputing

Bounded-error compression of particle data from hierarchical approximate methods

SC '99 Proceedings of the 1999 ACM/IEEE conference on Supercomputing

A wavelet-based approach for compressing kernel data in large-scale simulations of 3D integral problems

Computing in Science and Engineering

Experiences with Parallel N-Body Simulation

IEEE Transactions on Parallel and Distributed Systems

The inverse nearest neighbor problem with astrophysical applications

SODA '01 Proceedings of the twelfth annual ACM-SIAM symposium on Discrete algorithms

An efficient algorithm for fast parasitic extraction and passive order reduction of 3D interconnect models

Proceedings of the conference on Design, automation and test in Europe

Modeling and analysis of integrated spiral inductors for RF system-in-package

ASP-DAC '00 Proceedings of the 2000 Asia and South Pacific Design Automation Conference

A data-parallel implementation of O(N) hierarchical N-body methods

Supercomputing '96 Proceedings of the 1996 ACM/IEEE conference on Supercomputing

Parallel hierarchical solvers and preconditioners for boundary element methods

Supercomputing '96 Proceedings of the 1996 ACM/IEEE conference on Supercomputing

A virtual 3-D multipole accelerated extractor for VLSI parasitic interconnect capacitance

Proceedings of the 2001 Asia and South Pacific Design Automation Conference

1.34 Tflops molecular dynamics simulation for NaCl with a special-purpose computer: MDM

Proceedings of the 2000 ACM/IEEE conference on Supercomputing

Electrostatic fields without singularities: theory and algorithms

Proceedings of the seventh annual ACM-SIAM symposium on Discrete algorithms

Reconstruction and representation of 3D objects with radial basis functions

Proceedings of the 28th annual conference on Computer graphics and interactive techniques

Compression of particle data from hierarchical approximate methods

ACM Transactions on Mathematical Software (TOMS)

A hierarchical load-balancing framework for dynamic multithreaded computations

SC '98 Proceedings of the 1998 ACM/IEEE conference on Supercomputing

Analyzing the error bounds of multipole-based treecodes

SC '98 Proceedings of the 1998 ACM/IEEE conference on Supercomputing

Highly portable and efficient implementations of parallel adaptive N-body methods

SC '97 Proceedings of the 1997 ACM/IEEE conference on Supercomputing

Multilevel approximation of boundary integral operators

Computing

Scalable atomistic simulation algorithms for materials research

Proceedings of the 2001 ACM/IEEE conference on Supercomputing

An 8.61 Tflop/s molecular dynamics simulation for NaCl with a special-purpose computer: MDM

Proceedings of the 2001 ACM/IEEE conference on Supercomputing

Stress calculations on multiply connected domains

Journal of Computational Physics

A performance comparison of tree data structures for N-body simulation

Journal of Computational Physics

Vortex methods for direct numerical simulation of three-dimensional bluff body flows: application to the sphere at Re = 300, 500, and 1000

Journal of Computational Physics

Multiresolution green's function methods for interactive simulation of large-scale elastostatic objects

ACM Transactions on Graphics (TOG)

A fast spherical harmonics transform algorithm

Mathematics of Computation

Minimum Inter-Particle Distance at Global Minimizers of Lennard-Jones Clusters

Journal of Global Optimization

Direct surface extraction from 3D freehand ultrasound images

Proceedings of the conference on Visualization '02

Truly distribution-independent algorithms for the N-body problem

Proceedings of the 1994 ACM/IEEE conference on Supercomputing

Scalable parallel formulations of the barnes-hut method for n-body simulations

Proceedings of the 1994 ACM/IEEE conference on Supercomputing

Distribution-Independent Hierarchical Algorithmsfor the N-body Problem

The Journal of Supercomputing

A methodology towards automatic implementation of N-body algorithms

Applied Numerical Mathematics - Applied and computational mathematics: Selected papers of the third panamerican workshop Trujillo, Peru, 24-28 April 2000

A Hierarchical 3-D Poisson Modified Fourier Solver by Domain Decomposition

Journal of Scientific Computing

Simulating the Behavior of MEMS Devices: Computational Methods and Needs

IEEE Computational Science & Engineering

Using a Fast Multipole Method to Accelerate Spline Evaluations

IEEE Computational Science & Engineering

IES3: Efficient Electrostatic and Electromagnetic Simulation

IEEE Computational Science & Engineering

Atomistic Simulation of Nanostructured Materials

IEEE Computational Science & Engineering

Scalable Molecular-Dynamics, Visualization, and Data-Management Algorithms for Materials Simulations

Computing in Science and Engineering

The Fast Multipole Algorithm

Computing in Science and Engineering

Scaling Parallel Programs for Multiprocessors: Methodology and Examples

Computer

A finite difference domain decomposition method using local corrections for the solution of Poisson's equation

Journal of Computational Physics

A vortex particle method for two-dimensional compressible flow

Journal of Computational Physics

A multiple-heaps algorithm for parallel simulation of collision systems

Journal of Computational Physics

A virtual 3-D fast extractor for interconnect capacitance of multiple dielectrics

Microelectronic Engineering

Fast Stable Solver for Sequentially Semi-separable Linear Systems of Equations

HiPC '02 Proceedings of the 9th International Conference on High Performance Computing

A Framework for Parallel Tree-Based Scientific Simulations

ICPP '97 Proceedings of the international Conference on Parallel Processing

Model-Based Control of Adaptive Applications: An Overview

IPDPS '02 Proceedings of the 16th International Parallel and Distributed Processing Symposium

A Cost Optimal Parallel Algorithm for Computing Force Field in N-Body Simulations

COCOON '98 Proceedings of the 4th Annual International Conference on Computing and Combinatorics

Dynamic Compressed Hypertoctrees with Application to the N-Body Problem

Proceedings of the 19th Conference on Foundations of Software Technology and Theoretical Computer Science

JIGGLE: Java Interactive Graph Layout Environment

GD '98 Proceedings of the 6th International Symposium on Graph Drawing

Polynomial and Rational Evaluation and Interpolation (with Structured Matrices)

ICAL '99 Proceedings of the 26th International Colloquium on Automata, Languages and Programming

Collaborative simulation grid: multiscale quantum-mechanical/classical atomistic simulations on distributed PC clusters in the US and Japan

Proceedings of the 2002 ACM/IEEE conference on Supercomputing

High-density computing: a 240-processor Beowulf in one cubic meter

Proceedings of the 2002 ACM/IEEE conference on Supercomputing

Fast methods for simulation of biomolecule electrostatics

Proceedings of the 2002 IEEE/ACM international conference on Computer-aided design

Algorithms in FastImp: a fast and wideband impedance extraction program for complicated 3-D geometries

Proceedings of the 40th annual Design Automation Conference

Simulation of anisotropic diffusion by means of a diffusion velocity method

Journal of Computational Physics

An influence matrix particle-particle particle-mesh algorithm with exact particle-particle correction

Journal of Computational Physics

Efficient Galerkin techniques for multipole-accelerated capacitance extraction of 3-D structures with multiple dielectrics

ARVLSI '95 Proceedings of the 16th Conference on Advanced Research in VLSI (ARVLSI'95)

A Massively Parallel Fast Multipole Algorithm in Three Dimensions

HPDC '96 Proceedings of the 5th IEEE International Symposium on High Performance Distributed Computing

Comparative Study of Parallel Algorithms for 3-D Capacitance Extraction on Distributed Memory Multiprocessors

ICCD '00 Proceedings of the 2000 IEEE International Conference on Computer Design: VLSI in Computers & Processors

A treecode algorithm for computing Ewald summation of dipolar systems

Proceedings of the 2003 ACM symposium on Applied computing

Blue Matter, an application framework for molecular simulation on blue gene

Journal of Parallel and Distributed Computing - High-performance computational biology

Multipole-based preconditioners for large sparse linear systems

Parallel Computing - Parallel matrix algorithms and applications (PMAA '02)

Fast spherical Fourier algorithms

Journal of Computational and Applied Mathematics

Fast evaluation of boundary integral operators arising from an eddy current problem

Journal of Computational Physics

A fast solver for the Stokes equations with distributed forces in complex geometries

Journal of Computational Physics

Grid-Enabled Applications in Molecular Dynamics Simulations Using a Cluster of Dedicated Computers

SAINT-W '04 Proceedings of the 2004 Symposium on Applications and the Internet-Workshops (SAINT 2004 Workshops)

A fast algorithm for three-dimensional potential fields calculation: fast Fourier transform on multipoles

Journal of Computational Physics

Surface reconstruction based on compactly supported radial basis functions

Geometric modeling

Another preprocessing algorithm for generalized one-dimensional fast multipole method

Journal of Computational Physics

Simulating the dynamics and interactions of flexible fibers in Stokes flows

Journal of Computational Physics

Impact of far-field interactions on performance of multipole-based preconditioners for sparse linear systems

Proceedings of the 18th annual international conference on Supercomputing

A kernel-independent adaptive fast multipole algorithm in two and three dimensions

Journal of Computational Physics

Novel efficient techniques for computer simulation of magnetic recording

IBM Journal of Research and Development

The pursuit of the whole NChilada: Virtual petaflops using multi-adaptive algorithms for gravitational systems

IBM Journal of Research and Development

Blue Gene: a vision for protein science using a petaflop supercomputer

IBM Systems Journal - Deep computing for the life sciences

New multipole method for 3-D capacitance extraction

Journal of Computer Science and Technology

Variable order revised binary treecode

Journal of Computational Physics

Performance evaluation and tuning of GRAPE-6 - towards 40 "real" Tflops

Proceedings of the 2003 ACM/IEEE conference on Supercomputing

SCALLOP: A Highly Scalable Parallel Poisson Solver in Three Dimensions

Proceedings of the 2003 ACM/IEEE conference on Supercomputing

The Space Simulator: Modeling the Universe from Supernovae to Cosmology

Proceedings of the 2003 ACM/IEEE conference on Supercomputing

Overhead Analysis of a Dynamic Load Balancing Library for Cluster Computing

IPDPS '05 Proceedings of the 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS'05) - Workshop 1 - Volume 02

Laplace's equation and the Dirichlet-Neumann map: a new mode for Mikhlin's method

Journal of Computational Physics

Communications overlapping in fast multipole particle dynamics methods

Journal of Computational Physics

PODC: Paradigm-oriented distributed computing

Journal of Parallel and Distributed Computing

Vortex fluid for gaseous phenomena

Proceedings of the 2005 ACM SIGGRAPH/Eurographics symposium on Computer animation

Fast algorithms for spectral collocation with non-periodic boundary conditions

Journal of Computational Physics

K-means clustering for optimal partitioning and dynamic load balancing of parallel hierarchical N-body simulations

Journal of Computational Physics

Massively parallel implementation of a fast multipole method for distributed memory machines

Journal of Parallel and Distributed Computing

Fast wavelet BEM for 3d electromagnetic shaping

Applied Numerical Mathematics - Selected papers from the 16th Chemnitz finite element symposium 2003

The variable order fast multipole method for boundary integral equations of the second kind

Computing

Parallel multigrid summation for the N-body problem

Journal of Parallel and Distributed Computing

Design and implementation of a novel dynamic load balancing library for cluster computing

Parallel Computing - Heterogeneous computing

**-Matrix Arithmetics in Linear Complexity

Computing

Short note: Moore's law and the Saffman-Taylor instability

Journal of Computational Physics

Electrostatics and heat conduction in high contrast composite materials

Journal of Computational Physics

Modal reduction of mathematical models of biological molecules

Journal of Computational Physics

Adaptive multiquadric collocation for boundary layer problems

Journal of Computational and Applied Mathematics

Numerical methods for multiscale elliptic problems

Journal of Computational Physics

The Robin Hood method - A novel numerical method for electrostatic problems based on a non-local charge transfer

Journal of Computational Physics

An adaptive fast solver for the modified Helmholtz equation in two dimensions

Journal of Computational Physics

Fast solvers for 3D Poisson equations involving interfaces in a finite or the infinite domain

Journal of Computational and Applied Mathematics

Fast particle smoothing: if I had a million particles

ICML '06 Proceedings of the 23rd international conference on Machine learning

Learning low-rank kernel matrices

ICML '06 Proceedings of the 23rd international conference on Machine learning

Fast direct policy evaluation using multiscale analysis of Markov diffusion processes

ICML '06 Proceedings of the 23rd international conference on Machine learning

Fast multipole method for the biharmonic equation in three dimensions

Journal of Computational Physics

Short note: A kernel independent fast multipole algorithm for radial basis functions

Journal of Computational Physics

A wideband fast multipole method for the Helmholtz equation in three dimensions

Journal of Computational Physics

A fast algorithm for modeling multiple bubbles dynamics

Journal of Computational Physics

An integral equation method for epitaxial step-flow growth simulations

Journal of Computational Physics

Parallel simulation of group behaviors

WSC '04 Proceedings of the 36th conference on Winter simulation

Preliminary investigation of advanced electrostatics in molecular dynamics on reconfigurable computers

Proceedings of the 2006 ACM/IEEE conference on Supercomputing

A parallel algorithm for 3D dislocation dynamics

Journal of Computational Physics

Zonal methods for the parallel execution of range-limited N-body simulations

Journal of Computational Physics

Arbitrary order Krylov deferred correction methods for differential algebraic equations

Journal of Computational Physics

A two-dimensional wavelet-packet transform for matrix compression of integral equations with highly oscillatory kernel

Journal of Computational and Applied Mathematics

The N-body problem throughout the computer science curriculum

Journal of Computing Sciences in Colleges - Papers of the twelfth annual CCSC Northeastern Conference

Extending the fast multipole method to charges inside or outside a dielectric sphere

Journal of Computational Physics

Automating the development of quantum computational software

ACM-SE 45 Proceedings of the 45th annual southeast regional conference

A high-order 3D boundary integral equation solver for elliptic PDEs in smooth domains

Journal of Computational Physics

Scalable atomistic simulation algorithms for materials research

Scientific Programming - Best papers from SC 2001

Efficient random walks in the presence of complex two-dimensional geometries

Computers & Mathematics with Applications

An immersed interface method for the Vortex-In-Cell algorithm

Computers and Structures

Training a Support Vector Machine in the Primal

Neural Computation

Volumetric fast multipole method for modeling Schrödinger's equation

Journal of Computational Physics

Short Note: Correcting mesh-based force calculations to conserve both energy and momentum in molecular dynamics simulations

Journal of Computational Physics

A rescaling scheme with application to the long-time simulation of viscous fingering in a Hele-Shaw cell

Journal of Computational Physics

Visualizing SAT Instances and Runs of the DPLL Algorithm

Journal of Automated Reasoning

"New-version-fast-multipole-method" accelerated electrostatic calculations in biomolecular systems

Journal of Computational Physics

Visibility map for global illumination in point clouds

Proceedings of the 5th international conference on Computer graphics and interactive techniques in Australia and Southeast Asia

Fast evaluation of time domain fields in sub-wavelength source/observer distributions using accelerated Cartesian expansions (ACE)

Journal of Computational Physics

Extending the fast multipole method for charges inside a dielectric sphere in an ionic solvent: High-order image approximations for reaction fields

Journal of Computational Physics

Minimizing the object dimensions in circle and sphere packing problems

Computers and Operations Research

A fast multipole method for the three-dimensional Stokes equations

Journal of Computational Physics

High performance BLAS formulation of the multipole-to-local operator in the fast multipole method

Journal of Computational Physics

Combining the vortex-in-cell and parallel fast multipole methods for efficient domain decomposition simulations

Journal of Computational Physics

Computing with random quantum dot repulsion

Information Sciences: an International Journal

De Novo Ultrascale Atomistic Simulations On High-End Parallel Supercomputers

International Journal of High Performance Computing Applications

On the evaluation of layer potentials close to their sources

Journal of Computational Physics

Isotropic compact interpolation schemes for particle methods

Journal of Computational Physics

Trigonometric Hermite wavelet approximation for the integral equations of second kind with weakly singular kernel

Journal of Computational and Applied Mathematics

A periodic FMM for Maxwell's equations in 3D and its applications to problems related to photonic crystals

Journal of Computational Physics

The fast multipole method in electromagnetics applied to the simulation of metamaterials

Journal of Computational and Applied Mathematics

Performance evaluation of a dynamic load-balancing library for cluster computing

International Journal of Computational Science and Engineering

Acceleration of Fast Multipole Method Using Special-Purpose Computer Grape

International Journal of High Performance Computing Applications

Automatic Generation of FFT for Translations of Multipole Expansions in Spherical Harmonics

International Journal of High Performance Computing Applications

GRAPE-DR: 2-Pflops massively-parallel computer with 512-core, 512-Gflops processor chips for scientific computing

Proceedings of the 2007 ACM/IEEE conference on Supercomputing

An efficient algebraic multigrid preconditioner for a fast multipole boundary element method

Computing

Fast multipole methods on graphics processors

Journal of Computational Physics

Flow simulations using particles: bridging computer graphics and CFD

ACM SIGGRAPH 2008 classes

Fast electrostatic force calculation on parallel computer clusters

Journal of Computational Physics

Corner singularities for elliptic problems: Integral equations, graded meshes, quadrature, and compressed inverse preconditioning

Journal of Computational Physics

Vortex particle methods in aeroacoustic calculations

Journal of Computational Physics

Combining the vortex-in-cell and parallel fast multipole methods for efficient domain decomposition simulations

Journal of Computational Physics

Latency-Optimized Parallelization of the FMM Near-Field Computations

ICCS '07 Proceedings of the 7th international conference on Computational Science, Part I: ICCS 2007

Large Scale Three-Dimensional Boundary Element Simulation of Subduction

ICCS '07 Proceedings of the 7th international conference on Computational Science, Part III: ICCS 2007

Modeling the magnetic interactions between paramagnetic beads in magnetorheological fluids

Journal of Computational Physics

A high resolution spatially adaptive vortex method for separating flows. Part I: Two-dimensional domains

Journal of Computational Physics

Multilevel fast multipole algorithm for elastic wave scattering by large three-dimensional objects

Journal of Computational Physics

SUNVIZ: A Real-Time Visualization Environment for Space Physics Applications

ISVC '08 Proceedings of the 4th International Symposium on Advances in Visual Computing, Part II

An extension of Draghicescu's fast tree-code algorithm to the vortex method on a sphere

Journal of Computational and Applied Mathematics

A fast technique applied to the analysis of Resistive Wall Modes with 3D conducting structures

Journal of Computational Physics

Image charge approximations of reaction fields in solvents with arbitrary ionic strength

Journal of Computational Physics

Faster convergence and higher accuracy for the Dirichlet-Neumann map

Journal of Computational Physics

Multilevel summation of electrostatic potentials using graphics processing units

Parallel Computing

A rapid boundary perturbation algorithm for scattering by families of rough surfaces

Journal of Computational Physics

A Cartesian treecode for screened coulomb interactions

Journal of Computational Physics

The efficient solution of direct medium problems by using translation techniques

Mathematics and Computers in Simulation

A fast numerical solution method for two dimensional Fredholm integral equations of the second kind

Applied Numerical Mathematics

Fast radial basis function interpolation with Gaussians by localization and iteration

Journal of Computational Physics

Exploiting sparse Markov and covariance structure in multiresolution models

ICML '09 Proceedings of the 26th Annual International Conference on Machine Learning

An Object-Oriented Design for Two-Dimensional Vortex Particle Methods

ACM Transactions on Mathematical Software (TOMS)

Scalability of Gaussian 03 on SGI Altix: The Importance of Data Locality on CC-NUMA Architecture

IWOMP '09 Proceedings of the 5th International Workshop on OpenMP: Evolving OpenMP in an Age of Extreme Parallelism

Analysis of an immersed boundary method for three-dimensional flows in vorticity formulation

Journal of Computational Physics

Wavelet BEM on molecular surfaces: parametrization and implementation

Computing

The black-box fast multipole method

Journal of Computational Physics

Integral equation methods for elliptic problems with boundary conditions of mixed type

Journal of Computational Physics

Fast wavelet BEM for 3d electromagnetic shaping

Applied Numerical Mathematics - Selected papers from the 16th Chemnitz finite element symposium 2003

A Sixth-order Image Approximation to the Ionic Solvent Induced Reaction Field

Journal of Scientific Computing

A massively parallel adaptive fast-multipole method on heterogeneous architectures

Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis

42 TFlops hierarchical N-body simulations on GPUs with applications in both astrophysics and turbulence

Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis

A template for developing next generation parallel Delaunay refinement methods

Finite Elements in Analysis and Design

Visualization of Flow Past a Square Prism with Cut-Corners at the Front-Edge

Journal of Visualization

Coefficient-free adaptations of polynomial root-finders

Computers & Mathematics with Applications

Early performance data on the blue matter molecular simulation framework

IBM Journal of Research and Development

Magneto-mechanical simulations by a coupled fast multipole method-finite element method and multigrid solvers

Computers and Structures

Fast multipole method applied to elastostatic BEM-FEM coupling

Computers and Structures

A conservative high order semi-Lagrangian WENO method for the Vlasov equation

Journal of Computational Physics

An efficient algorithm for modeling spatially-correlated process variation in statistical full-chip leakage analysis

Proceedings of the 2009 International Conference on Computer-Aided Design

Boundary point method for linear elasticity using constant and quadratic moving elements

Advances in Engineering Software

Short Note: A Fourier-based elliptic solver for vortical flows with periodic and unbounded directions

Journal of Computational Physics

Fast solvers for 3D Poisson equations involving interfaces in a finite or the infinite domain

Journal of Computational and Applied Mathematics

Adaptive multiquadric collocation for boundary layer problems

Journal of Computational and Applied Mathematics

A hybrid numerical method for interfacial fluid flow with soluble surfactant

Journal of Computational Physics

Scalable cosmological simulations on parallel machines

VECPAR'06 Proceedings of the 7th international conference on High performance computing for computational science

Gaussian multiresolution models: exploiting sparse Markov and covariance structure

IEEE Transactions on Signal Processing

An evaluation of solution algorithms and numerical approximation methods for modeling an ion exchange process

Journal of Computational Physics

Fast directional algorithms for the Helmholtz kernel

Journal of Computational and Applied Mathematics

From 3D Point Clouds to Pose-Normalised Depth Maps

International Journal of Computer Vision

Solving a large dense linear system by adaptive cross approximation

Journal of Computational and Applied Mathematics

Multi-level grid algorithms for faster molecular energetics

Proceedings of the 14th ACM Symposium on Solid and Physical Modeling

Molecular simulations of electroosmotic flows in rough nanochannels

Journal of Computational Physics

The fast multipole method and Fourier convolution for the solution of acoustic scattering on regular volumetric grids

Journal of Computational Physics

A Boundary Perturbation Method for Vector Electromagnetic Scattering from Families of Doubly Periodic Gratings

Journal of Scientific Computing

Fast evaluation of Helmholtz potential on graphics processing units (GPUs)

Journal of Computational Physics

On the limits of GPU acceleration

HotPar'10 Proceedings of the 2nd USENIX conference on Hot topics in parallelism

Spectrally accurate fast summation for periodic Stokes potentials

Journal of Computational Physics

Fast and accurate numerical methods for solving elliptic difference equations defined on lattices

Journal of Computational Physics

Efficient simulation of power grids

IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems - Special section on the ACM IEEE international conference on formal methods and models for codesign (MEMOCODE) 2009

190 TFlops Astrophysical N-body Simulation on a Cluster of GPUs

Proceedings of the 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis

Diagnosis, Tuning, and Redesign for Multicore Performance: A Case Study of the Fast Multipole Method

Proceedings of the 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis

Fast integral equation methods for the modified Helmholtz equation

Journal of Computational Physics

An efficient high-order boundary element method for nonlinear wave-wave and wave-body interactions

Journal of Computational Physics

Radial basis function based level set interpolation and evolution for deformable modelling

Image and Vision Computing

Geometric transformation of the RBF implicit surface

Proceedings of the 9th ACM SIGGRAPH Conference on Virtual-Reality Continuum and its Applications in Industry

SelInv---An Algorithm for Selected Inversion of a Sparse Symmetric Matrix

ACM Transactions on Mathematical Software (TOMS)

The effective conductivity of random checkerboards

Journal of Computational Physics

Delaunay space division for RBF image reconstruction

Proceedings of the 26th Spring Conference on Computer Graphics

Applying a second-kind boundary integral equation for surface tractions in Stokes flow

Journal of Computational Physics

A pressure boundary integral method for direct fluid-particle simulations on Cartesian grids

Journal of Computational Physics

Multi-agent based simulations using fast multipole method: application to large scale simulations of flocking dynamical systems

Artificial Intelligence Review

On the computation of ground state and dynamics of Schrödinger-Poisson-Slater system

Journal of Computational Physics

Defining, contouring, and visualizing scalar functions on point-sampled surfaces

Computer-Aided Design

A comparison of vortex and pseudo-spectral methods for the simulation of periodic vortical flows at high Reynolds numbers

Journal of Computational Physics

Tracking Neumann Data for Stationary Free Boundary Problems

SIAM Journal on Control and Optimization

Fast Molecular Solvation Energetics and Forces Computation

SIAM Journal on Scientific Computing

A Multilevel Algorithm for Simultaneously Denoising and Deblurring Images

SIAM Journal on Scientific Computing

Fast Evaluation of Volume Potentials in Boundary Element Methods

SIAM Journal on Scientific Computing

Parallel High-Order Integrators

SIAM Journal on Scientific Computing

Flexible GMRES with Deflated Restarting

SIAM Journal on Scientific Computing

Iterative Near-Field Preconditioner for the Multilevel Fast Multipole Algorithm

SIAM Journal on Scientific Computing

Reduced-rank approximations to the far-field transform in the gridded fast multipole method

Journal of Computational Physics

Fast construction of hierarchical matrix representation from matrix-vector multiplication

Journal of Computational Physics

Fast integral equation methods for Rothe's method applied to the isotropic heat equation

Computers & Mathematics with Applications

The reduced basis method for the electric field integral equation

Journal of Computational Physics

A fast directional algorithm for high-frequency electromagnetic scattering

Journal of Computational Physics

A Fourier-series-based kernel-independent fast multipole method

Journal of Computational Physics

A positivity-preserving high-order semi-Lagrangian discontinuous Galerkin scheme for the Vlasov-Poisson equations

Journal of Computational Physics

A system of boundary integral equations for the transmission problem in acoustics

Applied Numerical Mathematics

Astrophysical particle simulations with large custom GPU clusters on three continents

Computer Science - Research and Development

On well-separated sets and fast multipole methods

Applied Numerical Mathematics

Simulation of ellipsoidal particle-reinforced materials with eigenstrain formulation of 3D BIE

Advances in Engineering Software

A multigrid solver for modeling complex interseismic stress fields

Computers & Geosciences

Second kind integral equations for the first kind Dirichlet problem of the biharmonic equation in three dimensions

Journal of Computational Physics

Fast multipole method on GPU: tackling 3-D capacitance extraction on massively parallel SIMD platforms

Proceedings of the 48th Design Automation Conference

A fast solver for nonlocal electrostatic theory in biomolecular science and engineering

Proceedings of the 48th Design Automation Conference

A multiresolution remeshed Vortex-In-Cell algorithm using patches

Journal of Computational Physics

Fluid simulation without pressure

ACM SIGGRAPH 2011 Posters

Scalable fast multipole methods on distributed heterogeneous architectures

Proceedings of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis

A fast mesh deformation method using explicit interpolation

Journal of Computational Physics

On the Numerical Rank of the Off-Diagonal Blocks of Schur Complements of Discretized Elliptic PDEs

SIAM Journal on Matrix Analysis and Applications

Discrete Symbol Calculus

SIAM Review

A Fast and Stable Solver for Singular Integral Equations on Piecewise Smooth Curves

SIAM Journal on Scientific Computing

Dithering by Differences of Convex Functions

SIAM Journal on Imaging Sciences

An Efficient Higher-Order Fast Multipole Boundary Element Solution for Poisson-Boltzmann-Based Molecular Electrostatics

SIAM Journal on Scientific Computing

Fast Evaluation of Multiquadric RBF Sums by a Cartesian Treecode

SIAM Journal on Scientific Computing

Fast Analytical Methods for Macroscopic Electrostatic Models in Biomolecular Simulations

SIAM Review

A fast direct solver for the integral equations of scattering theory on planar curves with corners

Journal of Computational Physics

Fast directional multilevel summation for oscillatory kernels based on Chebyshev interpolation

Journal of Computational Physics

A multi-moment vortex method for 2D viscous fluids

Journal of Computational Physics

Small webcomputing applied to distributed monte carlo calculations

ICCS'06 Proceedings of the 6th international conference on Computational Science - Volume Part III

A performance analysis framework for identifying potential benefits in GPGPU applications

Proceedings of the 17th ACM SIGPLAN symposium on Principles and Practice of Parallel Programming

Parallel performance of hierarchical multipole algorithms for inductance extraction

HiPC'04 Proceedings of the 11th international conference on High Performance Computing

Poster: Passing the three trillion particle limit with an error-controlled fast multipole method

Proceedings of the 2011 companion on High Performance Computing Networking, Storage and Analysis Companion

An efficient and stable spectral method for electromagnetic scattering from a layered periodic structure

Journal of Computational Physics

A massively parallel adaptive fast multipole method on heterogeneous architectures

Communications of the ACM

A non-stiff boundary integral method for 3D porous media flow with surface tension

Mathematics and Computers in Simulation

A memory saving fast A-EFIE solver for modeling low-frequency large-scale problems

Applied Numerical Mathematics

Randomized Algorithms for Matrices and Data

Foundations and Trends® in Machine Learning

High performance BLAS formulation of the adaptive Fast Multipole Method

Mathematical and Computer Modelling: An International Journal

Brief announcement: towards a communication optimal fast multipole method and its implications at exascale

Proceedings of the twenty-fourth annual ACM symposium on Parallelism in algorithms and architectures

Goal-Oriented Adaptivity and Multilevel Preconditioning for the Poisson-Boltzmann Equation

Journal of Scientific Computing

A Fast Treecode for Multiquadric Interpolation with Varying Shape Parameters

SIAM Journal on Scientific Computing

Difference Filter Preconditioning for Large Covariance Matrices

SIAM Journal on Matrix Analysis and Applications

A Butterfly Algorithm for Synthetic Aperture Radar Imaging

SIAM Journal on Imaging Sciences

A Fast Randomized Algorithm for Computing a Hierarchically Semiseparable Representation of a Matrix

SIAM Journal on Matrix Analysis and Applications

An automatic learning system to derive multipole and local expansions for the fast multipole method

ICSI'12 Proceedings of the Third international conference on Advances in Swarm Intelligence - Volume Part II

A fast BIE iteration method for an arbitrary body in a flow of incompressible inviscid fluid

Journal of Computational and Applied Mathematics

A massively space-time parallel N-body solver

SC '12 Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis

GRAPE-8: an accelerator for gravitational N-body simulation with 20.5Gflops/W performance

SC '12 Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis

Library support for parallel sorting in scientific computations

Euro-Par'07 Proceedings of the 13th international Euro-Par conference on Parallel Processing

Spectral and condition number estimates of the acoustic single-layer operator for low-frequency multiple scattering in dense media

Journal of Computational and Applied Mathematics

Wake Synthesis For Shallow Water Equation

Computer Graphics Forum

Image Approximations to Electrostatic Potentials in Layered Electrolytes/Dielectrics and an Ion-Channel Model

Journal of Scientific Computing

The fast multipole boundary element methods (FMBEM) and its applications in rolling engineering analysis

Computational Mechanics

A tuned and scalable fast multipole method as a preeminent algorithm for exascale systems

International Journal of High Performance Computing Applications

Discrete Calderon's projections on parallelepipeds and their application to computing exterior magnetic fields for FRC plasmas

Journal of Computational Physics

Linear-time smoke animation with vortex sheet meshes

EUROSCA'12 Proceedings of the 11th ACM SIGGRAPH / Eurographics conference on Computer Animation

Linear-time smoke animation with vortex sheet meshes

Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation

A kernel class allowing for fast computations in shape spaces induced by diffeomorphisms

Journal of Computational and Applied Mathematics

Adaptive fast multipole methods on the GPU

The Journal of Supercomputing

On the use of rational-function fitting methods for the solution of 2D Laplace boundary-value problems

Journal of Computational Physics

Fast Approximation of the Discrete Gauss Transform in Higher Dimensions

Journal of Scientific Computing

Computational physics on graphics processing units

PARA'12 Proceedings of the 11th international conference on Applied Parallel and Scientific Computing

Preparing scientific application software for exascale computing

PARA'12 Proceedings of the 11th international conference on Applied Parallel and Scientific Computing

Parallelization of the FMM on distributed-memory GPGPU systems for acoustic-scattering prediction

The Journal of Supercomputing

Oblique mid ocean ridge subduction modelling with the parallel fast multipole boundary element method

Computational Mechanics

Efficient FMM accelerated vortex methods in three dimensions via the Lamb-Helmholtz decomposition

Journal of Computational Physics

Design and implementation of a customizable work stealing scheduler

Proceedings of the 3rd International Workshop on Runtime and Operating Systems for Supercomputers

Second kind integral equation formulation for the modified biharmonic equation and its applications

Journal of Computational Physics

A scalable parallel algorithm for dynamic range-limited n-tuple computation in many-body molecular dynamics simulation

SC '13 Proceedings of the International Conference on High Performance Computing, Networking, Storage and Analysis

A fast multipole hybrid boundary node method for composite materials

Computational Mechanics

The role of inner summaries in the fast evaluation of thin-plate splines

Advances in Computational Mathematics

Quadrature by expansion: A new method for the evaluation of layer potentials

Journal of Computational Physics

Output-sensitive well-separated pair decompositions for dynamic point sets

Proceedings of the 21st ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems

A fast solver for Poisson problems on infinite regular lattices

Journal of Computational and Applied Mathematics

A wideband FMBEM for 2D acoustic design sensitivity analysis based on direct differentiation method

Computational Mechanics

Low-rank approximation of integral operators by using the Green formula and quadrature

Numerical Algorithms

An $$\mathcal O (N \log N)$$O(NlogN) Fast Direct Solver for Partial Hierarchically Semi-Separable Matrices

Journal of Scientific Computing

Coupling of Boundary Element and Wave Based Methods for the efficient solution of complex multiple scattering problems

Journal of Computational Physics

An interpolation-based fast-multipole accelerated boundary integral equation method for the three-dimensional wave equation

Journal of Computational Physics

A CPU: GPU Hybrid Implementation and Model-Driven Scheduling of the Fast Multipole Method

Proceedings of Workshop on General Purpose Processing Using GPUs

High-order accurate methods for Nyström discretization of integral equations on smooth curves in the plane

Advances in Computational Mathematics

Thermal analysis of 3D composites by a new fast multipole hybrid boundary node method

Computational Mechanics

A genetic programming based learning system to derive multipole and local expansions for the fast multipole method

AI Communications